Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QFX45_RS07865 Genome accession   NZ_CP123747
Coordinates   1557088..1557861 (-) Length   257 a.a.
NCBI ID   WP_224103917.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1552088..1562861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX45_RS07830 - 1552341..1553111 (-) 771 WP_000473705.1 isoprenyl transferase -
  QFX45_RS07835 frr 1553484..1554038 (-) 555 WP_001280006.1 ribosome recycling factor -
  QFX45_RS07840 pyrH 1554057..1554779 (-) 723 WP_000057330.1 UMP kinase -
  QFX45_RS07845 tsf 1554916..1555797 (-) 882 WP_000201387.1 translation elongation factor Ts -
  QFX45_RS07850 - 1555832..1555945 (-) 114 WP_001789890.1 hypothetical protein -
  QFX45_RS07855 rpsB 1555979..1556746 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  QFX45_RS07860 - 1556945..1557037 (-) 93 WP_001790530.1 hypothetical protein -
  QFX45_RS07865 codY 1557088..1557861 (-) 774 WP_224103917.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QFX45_RS07870 hslU 1557886..1559289 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  QFX45_RS07875 hslV 1559355..1559900 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QFX45_RS07880 xerC 1559897..1560793 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  QFX45_RS07885 trmFO 1561210..1562517 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28767.18 Da        Isoelectric Point: 6.0680

>NTDB_id=752343 QFX45_RS07865 WP_224103917.1 1557088..1557861(-) (codY) [Staphylococcus aureus strain 1.4]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQIESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=752343 QFX45_RS07865 WP_224103917.1 1557088..1557861(-) (codY) [Staphylococcus aureus strain 1.4]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAATAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424