Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QFX48_RS05785 Genome accession   NZ_CP123746
Coordinates   1197283..1198056 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 1.3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192283..1203056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX48_RS05765 trmFO 1192627..1193934 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  QFX48_RS05770 xerC 1194351..1195247 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  QFX48_RS05775 hslV 1195244..1195789 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QFX48_RS05780 hslU 1195855..1197258 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  QFX48_RS05785 codY 1197283..1198056 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QFX48_RS05790 - 1198107..1198199 (+) 93 WP_001790530.1 hypothetical protein -
  QFX48_RS05795 rpsB 1198398..1199165 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  QFX48_RS05800 - 1199199..1199312 (+) 114 WP_001789890.1 hypothetical protein -
  QFX48_RS05805 tsf 1199347..1200228 (+) 882 WP_304989010.1 translation elongation factor Ts -
  QFX48_RS05810 pyrH 1200365..1201087 (+) 723 WP_000057330.1 UMP kinase -
  QFX48_RS05815 frr 1201106..1201660 (+) 555 WP_001280006.1 ribosome recycling factor -
  QFX48_RS05820 - 1202033..1202803 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=752238 QFX48_RS05785 WP_000055337.1 1197283..1198056(+) (codY) [Staphylococcus aureus strain 1.3]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=752238 QFX48_RS05785 WP_000055337.1 1197283..1198056(+) (codY) [Staphylococcus aureus strain 1.3]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428