Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QFX58_RS08225 Genome accession   NZ_CP123745
Coordinates   1600833..1601606 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 1.7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1595833..1606606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX58_RS08190 - 1596086..1596856 (-) 771 WP_000473705.1 isoprenyl transferase -
  QFX58_RS08195 frr 1597229..1597783 (-) 555 WP_001280006.1 ribosome recycling factor -
  QFX58_RS08200 pyrH 1597802..1598524 (-) 723 WP_000057330.1 UMP kinase -
  QFX58_RS08205 tsf 1598661..1599542 (-) 882 WP_000201387.1 translation elongation factor Ts -
  QFX58_RS08210 - 1599577..1599690 (-) 114 WP_001789890.1 hypothetical protein -
  QFX58_RS08215 rpsB 1599724..1600491 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  QFX58_RS08220 - 1600690..1600782 (-) 93 WP_001790530.1 hypothetical protein -
  QFX58_RS08225 codY 1600833..1601606 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QFX58_RS08230 hslU 1601631..1603034 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  QFX58_RS08235 hslV 1603100..1603645 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QFX58_RS08240 xerC 1603642..1604538 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  QFX58_RS08245 trmFO 1604955..1606262 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=752169 QFX58_RS08225 WP_000055337.1 1600833..1601606(-) (codY) [Staphylococcus aureus strain 1.7]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=752169 QFX58_RS08225 WP_000055337.1 1600833..1601606(-) (codY) [Staphylococcus aureus strain 1.7]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428