Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QFX62_RS07870 Genome accession   NZ_CP123744
Coordinates   1556879..1557652 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 1.8     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1551879..1562652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX62_RS07835 - 1552132..1552902 (-) 771 WP_000473705.1 isoprenyl transferase -
  QFX62_RS07840 frr 1553275..1553829 (-) 555 WP_001280006.1 ribosome recycling factor -
  QFX62_RS07845 pyrH 1553848..1554570 (-) 723 WP_000057330.1 UMP kinase -
  QFX62_RS07850 tsf 1554707..1555588 (-) 882 WP_000201387.1 translation elongation factor Ts -
  QFX62_RS07855 - 1555623..1555736 (-) 114 WP_001789890.1 hypothetical protein -
  QFX62_RS07860 rpsB 1555770..1556537 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  QFX62_RS07865 - 1556736..1556828 (-) 93 WP_001790530.1 hypothetical protein -
  QFX62_RS07870 codY 1556879..1557652 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QFX62_RS07875 hslU 1557677..1559080 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  QFX62_RS07880 hslV 1559146..1559691 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QFX62_RS07885 xerC 1559688..1560584 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  QFX62_RS07890 trmFO 1561001..1562308 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=752082 QFX62_RS07870 WP_000055337.1 1556879..1557652(-) (codY) [Staphylococcus aureus strain 1.8]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=752082 QFX62_RS07870 WP_000055337.1 1556879..1557652(-) (codY) [Staphylococcus aureus strain 1.8]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428