Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QFX44_RS05790 Genome accession   NZ_CP123742
Coordinates   1197293..1198066 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 1.10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192293..1203066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX44_RS05770 trmFO 1192637..1193944 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  QFX44_RS05775 xerC 1194361..1195257 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  QFX44_RS05780 hslV 1195254..1195799 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QFX44_RS05785 hslU 1195865..1197268 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  QFX44_RS05790 codY 1197293..1198066 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QFX44_RS05795 - 1198117..1198209 (+) 93 WP_001790530.1 hypothetical protein -
  QFX44_RS05800 rpsB 1198408..1199175 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  QFX44_RS05805 - 1199209..1199322 (+) 114 WP_001789890.1 hypothetical protein -
  QFX44_RS05810 tsf 1199357..1200238 (+) 882 WP_000201387.1 translation elongation factor Ts -
  QFX44_RS05815 pyrH 1200375..1201097 (+) 723 WP_000057330.1 UMP kinase -
  QFX44_RS05820 frr 1201116..1201670 (+) 555 WP_001280006.1 ribosome recycling factor -
  QFX44_RS05825 - 1202043..1202813 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=751891 QFX44_RS05790 WP_000055337.1 1197293..1198066(+) (codY) [Staphylococcus aureus strain 1.10]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=751891 QFX44_RS05790 WP_000055337.1 1197293..1198066(+) (codY) [Staphylococcus aureus strain 1.10]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428