Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QFX46_RS08055 Genome accession   NZ_CP123739
Coordinates   1561872..1562645 (-) Length   257 a.a.
NCBI ID   WP_304984500.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1556872..1567645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX46_RS08020 - 1557125..1557895 (-) 771 WP_000473699.1 isoprenyl transferase -
  QFX46_RS08025 frr 1558268..1558822 (-) 555 WP_001280004.1 ribosome recycling factor -
  QFX46_RS08030 pyrH 1558841..1559563 (-) 723 WP_000057330.1 UMP kinase -
  QFX46_RS08035 tsf 1559700..1560581 (-) 882 WP_000201387.1 translation elongation factor Ts -
  QFX46_RS08040 - 1560616..1560729 (-) 114 WP_001789890.1 hypothetical protein -
  QFX46_RS08045 rpsB 1560763..1561530 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  QFX46_RS08050 - 1561729..1561821 (-) 93 WP_001790530.1 hypothetical protein -
  QFX46_RS08055 codY 1561872..1562645 (-) 774 WP_304984500.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QFX46_RS08060 hslU 1562670..1564073 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  QFX46_RS08065 hslV 1564139..1564684 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QFX46_RS08070 xerC 1564681..1565577 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  QFX46_RS08075 trmFO 1565994..1567301 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28741.06 Da        Isoelectric Point: 5.7568

>NTDB_id=751645 QFX46_RS08055 WP_304984500.1 1561872..1562645(-) (codY) [Staphylococcus aureus strain 2.5]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKENFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=751645 QFX46_RS08055 WP_304984500.1 1561872..1562645(-) (codY) [Staphylococcus aureus strain 2.5]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACTATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAATTTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428