Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   OU418_RS06070 Genome accession   NZ_CP123621
Coordinates   1180817..1181734 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain RLI2019     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1175817..1186734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU418_RS06055 (OU418_06055) trpS 1176397..1177389 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  OU418_RS06060 (OU418_06060) oppA 1178133..1179770 (+) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  OU418_RS06065 (OU418_06065) oppB 1179878..1180813 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  OU418_RS06070 (OU418_06070) amiD 1180817..1181734 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  OU418_RS06075 (OU418_06075) oppD 1181739..1182815 (+) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  OU418_RS06080 (OU418_06080) oppF 1182817..1183734 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  OU418_RS06085 (OU418_06085) yjbB 1183840..1185057 (+) 1218 WP_080332593.1 MFS transporter -
  OU418_RS06090 (OU418_06090) yjbC 1185221..1185799 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  OU418_RS06095 (OU418_06095) spx 1185980..1186375 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=751396 OU418_RS06070 WP_003232954.1 1180817..1181734(+) (amiD) [Bacillus subtilis strain RLI2019]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=751396 OU418_RS06070 WP_003232954.1 1180817..1181734(+) (amiD) [Bacillus subtilis strain RLI2019]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364