Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   A6764_RS16230 Genome accession   NZ_CP109943
Coordinates   3255790..3258048 (-) Length   752 a.a.
NCBI ID   WP_029097422.1    Uniprot ID   -
Organism   Brevibacillus sp. WF146     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3250790..3263048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6764_RS16205 (A6764_16205) - 3252562..3253626 (-) 1065 WP_065068158.1 AI-2E family transporter -
  A6764_RS16210 (A6764_16210) - 3254001..3254687 (+) 687 WP_029097418.1 TerC family protein -
  A6764_RS16215 (A6764_16215) - 3254766..3254954 (-) 189 WP_029097419.1 hypothetical protein -
  A6764_RS16220 (A6764_16220) - 3254990..3255196 (-) 207 WP_029097420.1 hypothetical protein -
  A6764_RS16225 (A6764_16225) - 3255216..3255713 (-) 498 WP_029097421.1 PRC-barrel domain-containing protein -
  A6764_RS16230 (A6764_16230) recD2 3255790..3258048 (-) 2259 WP_029097422.1 ATP-dependent RecD-like DNA helicase Machinery gene
  A6764_RS16235 (A6764_16235) - 3258291..3259424 (-) 1134 WP_029097423.1 cysteine desulfurase family protein -
  A6764_RS16240 (A6764_16240) cymR 3259458..3259877 (-) 420 WP_029097424.1 cysteine metabolism transcriptional regulator CymR -
  A6764_RS16245 (A6764_16245) - 3259988..3260161 (+) 174 WP_162836713.1 hypothetical protein -
  A6764_RS16250 (A6764_16250) - 3260193..3261521 (-) 1329 WP_029097425.1 AAA family ATPase -
  A6764_RS16255 (A6764_16255) - 3261677..3262720 (-) 1044 WP_035288551.1 oxidoreductase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 85166.32 Da        Isoelectric Point: 5.1677

>NTDB_id=751140 A6764_RS16230 WP_029097422.1 3255790..3258048(-) (recD2) [Brevibacillus sp. WF146]
MSQQTLSLFAEPYIRGYVAQEIFYNEETWYGVIRLTVEETTEPVKDAEVVVVGNFPRPHPEELYTFYGEWKTHPKFGQQY
AVKRYERETPKTRAGVERYLASGLFQGIGKTMAKRIVEHLGTEALTVIAEQPERLVEVPGISETRARQIYESVMEHRSLE
RAMVFLYEFGIGVQLALRIYQTYKLETMTVLTEQPYRLIEDVQGIGFKRADDIARATGIAASSEERVKAAALYVLQEACY
SEGHVFLPADELCAKTLRLLDECGGHRFQPEEITLAVESLFVESKVVWDEDRVYLPSLFFAEIGLAKRLRYFAERDEFGA
FPASEFYRALGVVEEELGITYAQTQRDAIEQAIKSGLMLLTGGPGTGKTTVIRGICRVFAQLHGISLDLKTYDEENPFPI
LLVAPTGRAAKRMSETTGLPAMTIHRLLGWKGESFEHDAEHPIRGRLLIVDEMSMVDVWLANQLFRAVPDEMQVILVGDP
DQLPSVGPGNVLQDMIRSGLLPRVQLSEIYRQAQESSIIRLAHDVRKGMVPSDLLATTPDRRFFTSSPQDVAEAVKQICA
GAVKKGYTAKDVQVLAPMYKGNAGVNRLNEELQELFNPKTEQKREVTFGDTVFRTGDKVLQLVNNAEEQVFNGDMGEIVA
IFYPNENAENTEMMVVSFDGREVVYRRSEYHQLTLAYCCSVHKSQGSEFPIVVMPFVRSYHRMLRRKLVYTGITRSKSFL
IMCGEPDAFRLAVETDEEGVRYSYLEERLKQG

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=751140 A6764_RS16230 WP_029097422.1 3255790..3258048(-) (recD2) [Brevibacillus sp. WF146]
GTGTCGCAGCAGACACTTTCCTTGTTTGCCGAACCTTACATACGCGGCTATGTCGCGCAAGAAATTTTTTACAATGAAGA
AACATGGTACGGTGTCATCCGTCTAACAGTGGAGGAGACTACAGAACCGGTGAAGGATGCGGAGGTCGTGGTCGTCGGCA
ACTTCCCCCGGCCGCATCCGGAGGAGCTGTACACGTTTTACGGCGAGTGGAAGACGCATCCGAAGTTTGGGCAGCAGTAC
GCGGTCAAAAGGTATGAACGGGAGACGCCCAAGACCCGGGCAGGGGTGGAGCGCTATCTGGCCAGCGGGCTGTTTCAAGG
CATCGGCAAAACCATGGCCAAACGCATCGTGGAACATCTGGGCACAGAAGCGCTCACGGTCATCGCCGAGCAGCCGGAGC
GGCTCGTGGAGGTTCCGGGCATCTCGGAAACGCGCGCGAGGCAGATCTACGAGTCGGTGATGGAACACCGCTCCCTGGAG
CGGGCGATGGTGTTTCTCTACGAGTTCGGCATCGGCGTCCAGTTGGCGCTGCGGATTTATCAGACGTACAAGCTGGAGAC
CATGACCGTGCTGACGGAACAGCCGTATCGGCTGATCGAGGATGTCCAGGGCATCGGGTTCAAACGGGCGGACGACATCG
CCCGGGCCACGGGAATTGCCGCTTCCTCGGAGGAGAGGGTCAAGGCGGCAGCCCTGTACGTGCTGCAGGAAGCCTGCTAC
TCCGAGGGACACGTGTTTCTGCCGGCGGACGAACTGTGCGCCAAAACGCTCCGCCTGCTGGACGAGTGCGGGGGACACCG
CTTTCAGCCGGAGGAGATCACGCTCGCCGTGGAATCGCTCTTTGTCGAGAGCAAAGTGGTTTGGGACGAAGACCGGGTCT
ATCTGCCCTCGCTGTTTTTCGCCGAAATCGGGCTGGCCAAGCGGCTGCGCTACTTTGCCGAGCGGGACGAGTTTGGCGCC
TTTCCCGCTTCGGAGTTTTACCGGGCGCTGGGCGTGGTGGAAGAAGAGCTGGGCATCACGTACGCCCAGACGCAGCGGGA
TGCGATCGAGCAGGCGATCAAATCCGGCTTGATGCTCTTGACCGGCGGGCCCGGCACGGGGAAAACGACGGTGATTCGCG
GGATCTGCCGCGTGTTTGCCCAACTGCACGGCATTTCGCTCGACCTGAAAACCTACGACGAAGAAAATCCCTTCCCCATC
CTGCTGGTCGCCCCCACCGGCCGGGCGGCCAAACGCATGTCGGAGACGACCGGTCTGCCGGCGATGACCATTCACCGCCT
CCTGGGCTGGAAAGGGGAGAGCTTTGAGCACGACGCGGAGCATCCGATCCGGGGCCGGCTGTTGATCGTCGACGAGATGT
CGATGGTGGACGTCTGGCTGGCCAATCAACTGTTCCGCGCCGTGCCGGACGAGATGCAGGTGATTCTGGTCGGCGACCCG
GATCAGCTTCCGTCGGTCGGTCCCGGCAACGTGCTGCAGGACATGATCCGCTCCGGTCTATTGCCGCGCGTGCAGCTCAG
CGAGATTTACCGGCAGGCGCAGGAGTCCTCGATCATCCGGCTGGCTCACGACGTCCGCAAGGGAATGGTTCCGTCCGACC
TGTTGGCCACGACCCCCGACCGGCGATTTTTCACAAGTTCGCCACAAGATGTGGCGGAAGCGGTGAAACAAATTTGCGCC
GGAGCCGTAAAGAAAGGGTATACGGCCAAAGATGTACAAGTCCTCGCTCCCATGTACAAGGGGAATGCCGGGGTGAACCG
GCTGAACGAAGAACTGCAGGAACTGTTCAACCCCAAGACCGAGCAGAAGCGGGAGGTGACGTTCGGCGACACCGTCTTCC
GCACCGGGGACAAGGTGCTGCAGTTGGTCAACAACGCCGAGGAACAGGTGTTCAACGGCGACATGGGAGAGATCGTCGCC
ATTTTTTACCCGAATGAAAACGCAGAGAACACCGAGATGATGGTCGTTTCCTTTGACGGCCGGGAAGTGGTGTACAGGCG
TTCGGAGTATCACCAGCTCACACTGGCCTACTGCTGCTCCGTGCACAAGTCGCAGGGCAGCGAGTTTCCCATCGTGGTCA
TGCCGTTTGTCCGAAGCTACCACCGCATGCTGCGGCGCAAGCTGGTGTATACGGGAATCACCCGCAGCAAGTCGTTTTTG
ATCATGTGCGGGGAGCCGGATGCGTTTCGCCTCGCGGTGGAAACCGACGAGGAAGGCGTGCGCTACAGCTACCTGGAAGA
GCGATTGAAGCAAGGGTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-722)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-658)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-246)

Helix-hairpin-helix domain (HHH_5)

(106-152)

AAA domain (AAA_30)

(341-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.134

99.468

0.499