Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   St703_RS09950 Genome accession   NZ_AP021853
Coordinates   2061401..2063758 (-) Length   785 a.a.
NCBI ID   WP_152080589.1    Uniprot ID   A0A5K7X2V9
Organism   Sporolactobacillus terrae strain 70-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2056401..2068758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  St703_RS09930 (St703_19790) - 2056583..2056849 (-) 267 WP_010024681.1 IreB family regulatory phosphoprotein -
  St703_RS09935 (St703_19800) alaS 2056888..2059530 (-) 2643 WP_152080587.1 alanine--tRNA ligase -
  St703_RS09940 (St703_19810) - 2059850..2060911 (-) 1062 WP_152080588.1 AI-2E family transporter -
  St703_RS09945 (St703_19820) - 2060986..2061183 (-) 198 WP_028976729.1 hypothetical protein -
  St703_RS09950 (St703_19830) recD2 2061401..2063758 (-) 2358 WP_152080589.1 ATP-dependent RecD-like DNA helicase Machinery gene
  St703_RS09955 (St703_19840) - 2063778..2064446 (-) 669 WP_028976727.1 tetratricopeptide repeat protein -
  St703_RS09960 (St703_19850) mnmA 2064651..2065745 (-) 1095 WP_051575070.1 tRNA 2-thiouridine(34) synthase MnmA -
  St703_RS09965 (St703_19860) - 2065784..2066950 (-) 1167 WP_028976725.1 cysteine desulfurase family protein -
  St703_RS09970 (St703_19870) cymR 2067003..2067425 (-) 423 WP_010025435.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87915.64 Da        Isoelectric Point: 4.6160

>NTDB_id=75029 St703_RS09950 WP_152080589.1 2061401..2063758(-) (recD2) [Sporolactobacillus terrae strain 70-3]
MEQTTMDLFSDQTNSVKGEPIRIVFQNSDNGYTVMIVRINETTEPINEKEITMVGFFPTIHLYETYQFAGKLKTHPRYGQ
QYEVETYRKMLPKSKSGVISYLSGDLFPGIGKKTAEMIVGELGEHAISDILNDPSCLERVPKLDKDKRSMIADTLLKNEG
LEKILIGLSDYGFGSQLATKIYQVYGNDSLEVIAENPYQLIQDIEGIGFQRADELAASLGISGNHPERIQAAYLYWLNER
AMNDGHVFMPEQATISEVQRLLSSKESIDEADLIHEIDVLEEDGKLIREDDQLYLPQLYYAEKGIVTGIQKLVEQDAEDE
YSESEFLKALGKVEDKLSMQYAESQQQAIREAIQSPIMILTGGPGTGKTTVIQGIVEVYAELNSCSLDPKDYDEDHPYPV
LLVAPTGRAAKRMKESTGLPAVTIHRLLGWNGGSGYAHDENDPIEGKLLIVDEMSMVDLWLANQLLKSLPDEMKMVIVGD
EDQLPSVGPGQVLSDLIQSDAVPVIRLTAIFRQAQGSSIIELAHEIKEGKAVDVAEPRKDRRFFKCHQNQVIDVICKVAA
GAQKKGYPPRDIQVLAPIYRGNAGIEQINRSLQELFNPKNDQKRELTYGDHIFRVHDKVLQLVNNPDEQVFNGDIGEISA
IFRAKETTDKEDTVIVTFDSSVEVKYLKHDLNQLTLAYCCSIHKAQGSEFPIVILPIVKGYHRMLKRNLIYTAVTRSKDS
LVLCGDVEAFNQAVSSNDVDQRNSNLARKIGERLHLIEESEPQLHPDEPEFDKPTEAESAPIAKD

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=75029 St703_RS09950 WP_152080589.1 2061401..2063758(-) (recD2) [Sporolactobacillus terrae strain 70-3]
ATGGAACAGACCACCATGGATCTTTTTTCAGATCAGACAAATTCAGTAAAGGGTGAGCCGATTCGAATCGTATTCCAGAA
CAGCGATAACGGATACACCGTGATGATTGTGAGAATTAATGAAACCACGGAGCCCATCAACGAAAAAGAGATCACAATGG
TTGGTTTTTTCCCAACGATCCATTTGTACGAAACCTATCAATTTGCCGGCAAGTTGAAGACGCATCCAAGATATGGTCAG
CAATATGAGGTAGAGACCTATCGAAAAATGCTGCCGAAATCGAAGTCCGGGGTAATCAGCTACCTTTCCGGCGATCTTTT
TCCCGGAATAGGGAAAAAAACGGCGGAGATGATCGTTGGCGAACTTGGCGAACACGCGATTTCTGATATTTTAAATGATC
CTTCATGTTTGGAGCGTGTACCGAAGCTCGATAAAGACAAGCGTTCGATGATTGCCGATACGTTGCTTAAAAATGAAGGA
TTGGAGAAAATTCTGATCGGGCTCTCGGACTACGGATTTGGTTCACAGCTGGCGACGAAGATCTATCAAGTATACGGAAA
TGATAGTCTCGAGGTTATCGCGGAGAATCCATACCAGCTGATTCAGGATATCGAGGGTATTGGTTTTCAACGTGCGGATG
AACTTGCCGCATCTCTTGGAATTTCCGGAAACCATCCGGAGCGGATTCAAGCGGCCTATTTGTATTGGTTGAATGAACGG
GCGATGAATGATGGCCATGTTTTCATGCCGGAACAAGCGACAATTTCAGAAGTCCAAAGACTATTATCCTCAAAAGAGAG
CATCGATGAAGCGGATCTCATCCATGAGATTGATGTTCTGGAAGAGGATGGAAAATTGATTCGGGAAGACGATCAGCTTT
ATCTGCCGCAGCTTTACTATGCGGAAAAAGGAATTGTCACCGGCATTCAGAAGCTGGTTGAACAAGATGCAGAGGATGAA
TACTCGGAAAGCGAATTCCTCAAGGCGCTTGGCAAGGTTGAGGATAAGCTGTCGATGCAATATGCTGAGAGTCAGCAGCA
AGCCATCCGTGAAGCGATCCAGTCCCCGATCATGATCTTAACCGGCGGGCCGGGAACGGGAAAGACGACGGTCATTCAAG
GGATTGTAGAAGTCTATGCGGAGCTGAACAGTTGTTCGCTCGATCCGAAAGATTATGATGAGGATCATCCTTATCCTGTG
TTGCTTGTTGCACCAACCGGACGTGCGGCAAAACGGATGAAAGAATCGACAGGACTTCCGGCTGTGACGATCCATCGGTT
GCTCGGATGGAATGGCGGTTCCGGTTATGCGCATGATGAAAACGATCCGATTGAAGGAAAGCTGCTGATCGTCGATGAGA
TGTCAATGGTTGATTTATGGCTCGCCAATCAGCTGCTTAAGTCGTTGCCGGATGAGATGAAGATGGTCATTGTCGGAGAC
GAAGATCAGCTGCCTTCCGTTGGTCCCGGGCAGGTACTGAGCGACTTGATTCAATCCGACGCCGTTCCGGTGATCCGATT
AACCGCTATTTTCCGTCAGGCGCAAGGCTCATCAATTATCGAACTTGCTCATGAAATCAAAGAGGGTAAAGCGGTCGATG
TCGCAGAGCCGCGAAAGGATCGCCGTTTCTTCAAATGCCATCAGAACCAAGTGATTGATGTCATCTGCAAGGTCGCTGCC
GGCGCACAAAAAAAGGGCTATCCGCCGAGGGACATTCAAGTGCTTGCGCCGATTTACCGTGGCAATGCCGGTATCGAACA
GATTAATCGCTCCCTTCAAGAACTCTTTAATCCGAAAAATGACCAGAAACGTGAGCTGACGTACGGAGATCATATCTTCC
GTGTTCATGATAAGGTATTGCAGTTGGTGAACAATCCTGATGAGCAAGTATTTAACGGTGACATTGGTGAGATATCCGCT
ATTTTTCGTGCAAAGGAGACGACAGATAAGGAAGATACGGTGATCGTCACTTTTGATTCGTCGGTTGAAGTCAAATACCT
CAAGCATGATCTGAATCAGCTGACACTCGCGTACTGCTGCTCAATTCATAAGGCGCAAGGCAGCGAATTTCCAATTGTCA
TCCTGCCAATTGTTAAGGGGTATCACCGCATGCTGAAAAGGAATCTGATTTACACGGCGGTGACCCGGAGCAAGGATTCT
CTCGTTCTATGCGGCGATGTTGAGGCATTTAATCAAGCGGTAAGCAGTAATGACGTGGATCAGCGCAACTCTAATCTTGC
GCGAAAAATAGGCGAACGGCTGCATCTGATTGAGGAATCGGAACCTCAGTTGCATCCTGATGAGCCGGAGTTTGATAAGC
CAACCGAAGCAGAAAGCGCTCCCATCGCAAAGGATTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-658)

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K7X2V9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.231

97.07

0.507

Multiple sequence alignment