Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OHU65_RS23295 Genome accession   NZ_CP109859
Coordinates   4440889..4443246 (-) Length   785 a.a.
NCBI ID   WP_264408583.1    Uniprot ID   -
Organism   Priestia megaterium strain 207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4435889..4448246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU65_RS23275 (OHU65_23275) alaS 4436198..4438831 (-) 2634 WP_264408582.1 alanine--tRNA ligase -
  OHU65_RS23280 (OHU65_23280) - 4439220..4440281 (-) 1062 WP_013059290.1 AI-2E family transporter -
  OHU65_RS23285 (OHU65_23285) - 4440396..4440530 (-) 135 WP_013059291.1 YrzQ family protein -
  OHU65_RS23290 (OHU65_23290) - 4440556..4440747 (-) 192 WP_013059292.1 hypothetical protein -
  OHU65_RS23295 (OHU65_23295) recD2 4440889..4443246 (-) 2358 WP_264408583.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHU65_RS23300 (OHU65_23300) - 4443271..4443930 (-) 660 WP_013085089.1 lipopolysaccharide assembly protein LapB -
  OHU65_RS23305 (OHU65_23305) mnmA 4444088..4445200 (-) 1113 WP_028410593.1 tRNA 2-thiouridine(34) synthase MnmA -
  OHU65_RS23310 (OHU65_23310) - 4445307..4446449 (-) 1143 WP_264408584.1 cysteine desulfurase family protein -
  OHU65_RS23315 (OHU65_23315) cymR 4446473..4446889 (-) 417 WP_013059297.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88713.11 Da        Isoelectric Point: 5.1123

>NTDB_id=750282 OHU65_RS23295 WP_264408583.1 4440889..4443246(-) (recD2) [Priestia megaterium strain 207]
MNEEQVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSETDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEGLSRQQGDRSFIRCQGPHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=750282 OHU65_RS23295 WP_264408583.1 4440889..4443246(-) (recD2) [Priestia megaterium strain 207]
ATGAACGAAGAACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCGATTGTAACGGTCTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTTA
CAGGCTATTTTCCTAAGCTGAATGAAGATGAAGTATACACGTTTTACGGTGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAGTTTCATGTTGAACAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTGTCTAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAACATTGTGGACGCCCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCTGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGCTTTAGCAGGGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCAGGTATTTTATATGTCATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGAAAAAGCAGGCA
TGAGAATCTGTCTGAAACGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCGCCCCTTTTCTATGCTGAAAAAGGGCTGGTTAAAGCTATTCAAAAAATTATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCGGAATCAGAATTCTTATTGGCACTGGGTGAACTAGAAGAGCGGTTAGACGTGCAATATGCACCTTC
TCAGCGCAAGGGCATACAAACCGCTTTAATGTCTCCGATGCTTCTTTTAACAGGTGGACCAGGTACAGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGATTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTGGCACCTACGGGACGAGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCAGTTACAAT
CCACCGATTATTAAAATGGAACGGACAAGAAGGATTTGATCATAATGAGGAGAATCCAATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAATCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGCTCAGAAGTAGTTCCTAC
CGTCCGTCTGACGGATGTATACCGGCAAGCCGAAGGATCTTCAATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGGCTTATCAAGGCAGCAAGGAGATCGTTCTTTTATTCGTTGTCAAGGACCGCACATTACGAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTCTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAGCTGAATGAAGTTCTTCAGGAATTATTCAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCGGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGATTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCACAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTTAAAAGCTATTACCGGATGCTGCGACGCAATTTACTTTATACCGCCGTTACGCGAAGC
AAACAGTTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGAAATGAAGACAGCGTCCGACAAAC
GAATTTACAGCCCTTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCCTTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

AAA domain (AAA_30)

(344-551)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.811

99.618

0.636