Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   OH130_RS02200 Genome accession   NZ_CP109817
Coordinates   440411..440926 (+) Length   171 a.a.
NCBI ID   WP_002805379.1    Uniprot ID   -
Organism   Campylobacter coli strain CC21NB01a     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435411..445926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH130_RS02175 (OH130_02175) - 435867..436205 (+) 339 WP_002777761.1 hypothetical protein -
  OH130_RS02180 (OH130_02180) - 436214..436939 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  OH130_RS02185 (OH130_02185) dxr 436936..438012 (+) 1077 WP_057030649.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  OH130_RS02190 (OH130_02190) - 438009..439403 (+) 1395 WP_002777754.1 M99 family carboxypeptidase catalytic domain-containing protein -
  OH130_RS02195 (OH130_02195) tsaD 439400..440407 (+) 1008 WP_002785735.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  OH130_RS02200 (OH130_02200) ctsG 440411..440926 (+) 516 WP_002805379.1 type II secretion system protein Machinery gene
  OH130_RS02205 (OH130_02205) - 440926..442176 (+) 1251 WP_002817246.1 DUF2920 family protein -
  OH130_RS02210 (OH130_02210) - 442187..444019 (+) 1833 WP_264378540.1 motility associated factor glycosyltransferase family protein -
  OH130_RS02215 (OH130_02215) - 444016..445833 (+) 1818 WP_264378541.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18968.98 Da        Isoelectric Point: 8.4832

>NTDB_id=749570 OH130_RS02200 WP_002805379.1 440411..440926(+) (ctsG) [Campylobacter coli strain CC21NB01a]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLNN
FIGIKEVNFKVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=749570 OH130_RS02200 WP_002805379.1 440411..440926(+) (ctsG) [Campylobacter coli strain CC21NB01a]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAAGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGCAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCCAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

77.778

100

0.778