Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FOF60_RS17815 Genome accession   NZ_CP109811
Coordinates   3461723..3464089 (-) Length   788 a.a.
NCBI ID   WP_192470778.1    Uniprot ID   -
Organism   Mesobacillus jeotgali strain SBJS01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3456723..3469089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOF60_RS17800 (FOF60_17800) dtd 3457973..3458413 (-) 441 WP_192470780.1 D-aminoacyl-tRNA deacylase -
  FOF60_RS17805 (FOF60_17805) - 3458472..3460668 (-) 2197 Protein_3496 RelA/SpoT family protein -
  FOF60_RS17810 (FOF60_17810) - 3461220..3461732 (-) 513 WP_192470779.1 adenine phosphoribosyltransferase -
  FOF60_RS17815 (FOF60_17815) recJ 3461723..3464089 (-) 2367 WP_192470778.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FOF60_RS17820 (FOF60_17820) - 3464230..3464547 (-) 318 WP_192470777.1 lipopolysaccharide assembly LapA domain-containing protein -
  FOF60_RS17825 (FOF60_17825) - 3464568..3465463 (-) 896 Protein_3500 cation diffusion facilitator family transporter -
  FOF60_RS17830 (FOF60_17830) secDF 3465606..3467876 (-) 2271 WP_192470776.1 protein translocase subunit SecDF -
  FOF60_RS17835 (FOF60_17835) - 3468149..3468445 (-) 297 WP_192470775.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88219.94 Da        Isoelectric Point: 5.1614

>NTDB_id=749504 FOF60_RS17815 WP_192470778.1 3461723..3464089(-) (recJ) [Mesobacillus jeotgali strain SBJS01]
MLKPKSRWIVKKSDQTVIDSLAKELSINHLTASLLVNRGLDTVEDARYFLFGQKSEFHDPFLLKDMDKAVERINKAIETQ
EPILVFGDYDADGVSSTTVMMKALAELGANADYYIPNRFTEGYGPNEKAFRSASDSGVGLIITVDTGISALHEADVAKEV
GIDLIITDHHEPGPVLPDAFAIIHPKLDDSVYPFKDLAGVGVAFKVAHALLGRVPEHLLEFAAIGTIADLVPLMGENRLI
ALRGIEKLKSSQTPGLNALLKLAKTDRSSIDEETIGFMIGPRVNAAGRLGSADPAVQLMMTDDPEEAMMLAEEIDSINKE
RQNIVSQIAEEAVSEVEMNYPIHDNSVLVVGKEGWNAGVIGIVASKLVEKYYRPTIVLSFDKEKGLAKGSARSIAGFDLF
KNLSTCREILPHFGGHPMAAGMTLKLNDVDELRSRLNSLAKEQLKEEDLIPVSHIDARIDVKEITIETINELGQLSPYGV
SNPKPKVLIDGANISTLRKIGADQSHLKLALEEEGTVIDGIGFGFGHLHDHISPSSKLSVIGELSINEWNNIRKPQIFLR
DVAVKSWQLFDFRGLKRLEKLPEMIPGDHIKWVLFNADLKNKFSPIIGESLELVTTDEQAEQLNLEHSYVVLLDLPPSKE
ILEKLFSGKNPGRVYVHFYKESSDFFTTMPTREHFKWFYAFLAKKGPFDLKRYGDDLAKHRGWTKETIDFMSKVFFELDF
VKINNGFISLEENVPKRDLTESKTYQHKVQAFTLENELLYSSYEQLKNWFDQFIQESVKNEEAIIQWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=749504 FOF60_RS17815 WP_192470778.1 3461723..3464089(-) (recJ) [Mesobacillus jeotgali strain SBJS01]
ATGTTAAAGCCAAAATCAAGGTGGATTGTAAAAAAATCCGACCAGACAGTAATAGATTCACTCGCCAAGGAATTGAGCAT
AAATCATCTGACTGCTTCACTGCTAGTCAATCGCGGACTTGATACCGTGGAAGATGCCCGGTATTTTTTGTTTGGGCAAA
AAAGCGAATTTCACGACCCTTTTTTGCTGAAAGACATGGATAAGGCAGTTGAGCGGATCAATAAAGCAATAGAAACGCAA
GAGCCTATTCTTGTGTTTGGTGACTATGATGCAGACGGTGTGAGCAGTACGACGGTCATGATGAAAGCCCTGGCTGAGCT
GGGGGCGAACGCCGACTATTACATACCGAACCGTTTTACAGAAGGATATGGTCCGAATGAAAAAGCATTTCGGAGTGCCT
CGGACAGCGGAGTGGGCTTGATCATCACTGTCGATACGGGTATTTCTGCTCTCCATGAAGCAGATGTTGCCAAAGAAGTG
GGGATTGACCTGATCATTACAGACCACCATGAACCTGGCCCGGTCCTGCCGGATGCATTTGCAATTATCCATCCAAAGCT
GGACGATAGTGTATACCCTTTCAAGGATTTAGCTGGTGTGGGTGTCGCTTTTAAGGTTGCCCATGCCCTTCTGGGGAGAG
TCCCAGAGCATTTGCTGGAATTTGCGGCTATTGGGACCATTGCCGACCTTGTCCCCCTTATGGGAGAGAACAGGCTGATT
GCCCTGAGAGGAATCGAGAAGTTGAAATCGAGCCAGACACCTGGCTTGAATGCGCTGCTTAAACTAGCGAAAACAGACAG
ATCGTCTATTGATGAAGAAACAATAGGTTTTATGATTGGACCGAGGGTCAATGCAGCAGGGAGACTTGGGAGCGCGGACC
CAGCGGTGCAATTAATGATGACAGATGATCCAGAAGAAGCAATGATGCTTGCGGAAGAAATAGATTCAATCAATAAAGAG
CGTCAAAACATCGTTTCACAAATTGCCGAAGAAGCAGTTTCTGAAGTGGAAATGAATTACCCAATCCATGATAATTCAGT
CCTTGTCGTTGGTAAGGAAGGCTGGAATGCAGGGGTCATCGGCATCGTAGCTTCCAAGCTTGTAGAAAAATATTACCGGC
CAACGATTGTCCTTAGTTTTGACAAAGAAAAGGGACTTGCGAAGGGGTCAGCGCGAAGTATCGCTGGTTTCGATCTTTTC
AAAAATCTATCAACCTGCAGAGAAATCCTTCCGCATTTTGGCGGTCATCCTATGGCTGCGGGCATGACATTGAAACTTAA
TGATGTTGACGAATTAAGGTCAAGATTGAATTCACTGGCAAAAGAGCAGCTGAAAGAAGAAGACTTAATTCCTGTCTCTC
ATATCGATGCGAGAATAGATGTTAAAGAGATTACGATTGAGACCATAAATGAACTTGGGCAGCTATCTCCATATGGCGTC
AGCAACCCAAAACCCAAGGTCCTGATTGATGGAGCTAATATATCAACCCTCAGAAAGATAGGGGCAGATCAGTCCCATCT
TAAGCTGGCACTGGAAGAGGAAGGCACCGTTATTGATGGAATTGGATTCGGGTTTGGCCATCTCCATGACCATATCTCGC
CGAGCTCGAAGCTGTCCGTCATTGGCGAATTGTCCATCAACGAATGGAACAATATCAGGAAGCCGCAAATTTTCCTCAGG
GATGTAGCGGTTAAGTCCTGGCAGCTATTCGATTTCCGCGGTCTTAAGAGACTGGAAAAGCTACCCGAAATGATTCCAGG
GGATCATATTAAATGGGTTCTCTTTAACGCTGATTTGAAAAATAAGTTTTCTCCAATTATCGGAGAGTCATTGGAACTGG
TAACCACCGATGAACAAGCTGAACAGCTGAATCTCGAACATTCGTATGTTGTTCTATTGGACCTGCCGCCATCCAAGGAA
ATTCTGGAGAAGTTATTTTCAGGAAAAAATCCGGGAAGGGTCTATGTCCATTTTTATAAAGAAAGCAGCGATTTCTTCAC
GACGATGCCAACGAGGGAGCATTTCAAATGGTTTTACGCATTCCTTGCCAAGAAAGGCCCATTTGATCTTAAACGGTATG
GCGACGATTTGGCCAAGCATCGAGGGTGGACAAAAGAAACAATAGATTTCATGTCGAAGGTGTTTTTTGAACTAGATTTT
GTTAAAATAAACAATGGGTTTATTTCACTAGAAGAAAATGTCCCCAAAAGGGATCTGACTGAATCCAAAACATATCAGCA
CAAGGTGCAAGCATTCACTCTTGAAAATGAATTGCTCTACTCATCGTATGAGCAATTGAAGAACTGGTTTGACCAATTCA
TTCAAGAGTCGGTGAAAAATGAGGAGGCAATTATTCAATGGATTTGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(315-438)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.934

99.492

0.527