Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   OKF33_RS06835 Genome accession   NZ_CP109654
Coordinates   1313824..1314339 (-) Length   171 a.a.
NCBI ID   WP_264306045.1    Uniprot ID   -
Organism   Campylobacter coli strain 10-02932     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1308824..1319339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKF33_RS06820 - 1308925..1310745 (-) 1821 WP_153260368.1 motility associated factor glycosyltransferase family protein -
  OKF33_RS06825 - 1310742..1312571 (-) 1830 WP_264306044.1 motility associated factor glycosyltransferase family protein -
  OKF33_RS06830 - 1312583..1313824 (-) 1242 WP_002780551.1 DUF2920 family protein -
  OKF33_RS06835 ctsG 1313824..1314339 (-) 516 WP_264306045.1 type II secretion system protein Machinery gene
  OKF33_RS06840 tsaD 1314343..1315350 (-) 1008 WP_002788427.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  OKF33_RS06845 - 1315347..1316741 (-) 1395 WP_002797421.1 M99 family carboxypeptidase catalytic domain-containing protein -
  OKF33_RS06850 dxr 1316738..1317814 (-) 1077 WP_261534003.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  OKF33_RS06855 - 1317811..1318539 (-) 729 WP_264306046.1 phosphatidate cytidylyltransferase -
  OKF33_RS06860 - 1318548..1318886 (-) 339 WP_002825237.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18730.58 Da        Isoelectric Point: 6.4693

>NTDB_id=748785 OKF33_RS06835 WP_264306045.1 1313824..1314339(-) (ctsG) [Campylobacter coli strain 10-02932]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
LNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=748785 OKF33_RS06835 WP_264306045.1 1313824..1314339(-) (ctsG) [Campylobacter coli strain 10-02932]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTAAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.228

100

0.912