Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   N8A73_RS07760 Genome accession   NZ_CP109651
Coordinates   1520649..1521428 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain LG01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1515649..1526428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A73_RS07740 trmFO 1516353..1517657 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  N8A73_RS07745 xerC 1517720..1518637 (+) 918 WP_061109841.1 tyrosine recombinase XerC -
  N8A73_RS07750 hslV 1518652..1519197 (+) 546 WP_034281773.1 ATP-dependent protease subunit HslV -
  N8A73_RS07755 hslU 1519214..1520614 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  N8A73_RS07760 codY 1520649..1521428 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  N8A73_RS07765 flgB 1521717..1522106 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  N8A73_RS07770 flgC 1522106..1522558 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  N8A73_RS07775 fliE 1522570..1522887 (+) 318 WP_070325817.1 flagellar hook-basal body complex protein FliE -
  N8A73_RS07780 fliF 1522937..1524529 (+) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  N8A73_RS07785 fliG 1524541..1525557 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  N8A73_RS07790 fliH 1525550..1526314 (+) 765 WP_034281779.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=748739 N8A73_RS07760 WP_007499612.1 1520649..1521428(+) (codY) [Bacillus safensis strain LG01]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=748739 N8A73_RS07760 WP_007499612.1 1520649..1521428(+) (codY) [Bacillus safensis strain LG01]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAGCAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAGGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAGAACCGTGACTTATTCCA
ATCAGGCTTAACAACAATTGTCCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAA
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTCCAAATGGCGATTAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTTGTCGCAAGTAAAATTGCAGATCGTGTAGGGATTACGC
GTTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471