NTDB

Overview

Name	comYH	Type	Machinery gene
Locus tag	OF800_RS08810	Genome accession	NZ_CP109636
Coordinates	1756900..1757835 (-)	Length	311 a.a.
NCBI ID	WP_014025404.1	Uniprot ID	A0A6L2ZWA9
Organism	Lactococcus garvieae strain Alexii-6_2
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1751900..1762835

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OF800_RS08785 (OF800_08785)	-	1751948..1752808 (-)	861	WP_003133325.1	S1 RNA-binding domain-containing protein	-
OF800_RS08790 (OF800_08790)	frr	1752916..1753473 (-)	558	WP_003133324.1	ribosome recycling factor	-
OF800_RS08795 (OF800_08795)	pyrH	1753503..1754219 (-)	717	WP_003133322.1	UMP kinase	-
OF800_RS08800 (OF800_08800)	-	1754310..1755503 (-)	1194	WP_003133320.1	acetate kinase	-
OF800_RS08805 (OF800_08805)	-	1755622..1756815 (-)	1194	WP_042218440.1	acetate kinase	-
OF800_RS08810 (OF800_08810)	comYH	1756900..1757835 (-)	936	WP_014025404.1	class I SAM-dependent methyltransferase	Machinery gene
OF800_RS08815 (OF800_08815)	-	1757881..1758111 (-)	231	WP_264308489.1	DUF3165 domain-containing protein	-
OF800_RS08820 (OF800_08820)	typA	1758187..1760028 (-)	1842	WP_003133313.1	translational GTPase TypA	-
OF800_RS08825 (OF800_08825)	-	1760349..1760561 (+)	213	WP_003133311.1	YqgQ family protein	-
OF800_RS08830 (OF800_08830)	-	1760554..1761519 (+)	966	WP_003133309.1	ROK family glucokinase	-
OF800_RS08835 (OF800_08835)	-	1761539..1761919 (+)	381	WP_003133308.1	rhodanese-like domain-containing protein	-
OF800_RS08840 (OF800_08840)	-	1761957..1762403 (-)	447	WP_003133306.1	Dps family protein	-

Sequence

Protein

Download Length: 311 a.a. Molecular weight: 35138.19 Da Isoelectric Point: 4.6737

                                >NTDB_id=748704 OF800_RS08810 WP_014025404.1 1756900..1757835(-) (comYH) [Lactococcus garvieae strain Alexii-6_2]

MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV

APMQANHNLTPDSIGFIFNFIIEELHKERKIRVLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE

ASFLQIDAVKPQPLESVDVVMSDLPVGYYPDDETARHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ

SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLADLADRSILQEFMSEFVKNVKI

Nucleotide

Download Length: 936 bp

                                >NTDB_id=748704 OF800_RS08810 WP_014025404.1 1756900..1757835(-) (comYH) [Lactococcus garvieae strain Alexii-6_2]

ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTGGTTCTTGAAAATATTATGGCAATTCAAGCGGAGCTCTTGACGGA

TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAGTTTGCATCTCTGACGAAGGAAAATAATG

ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAGTGGCAAAAGCTGTTTCAGTTTGTCTTGCTTCAAGGGTCACGTGTC

GCACCAATGCAAGCAAATCATAATTTAACACCAGATTCTATTGGGTTTATCTTTAATTTTATCATTGAAGAGTTGCACAA

AGAAAGAAAGATTCGTGTACTAGAATTTGGCTCAGGAACAGGGAATTTAGCGGAAACGCTCTTGGTTCACATGCAAAAAG

AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCCGAAGTCATGGGAACAGAA

GCAAGTTTTCTCCAAATTGACGCCGTGAAACCACAGCCCTTGGAGTCTGTAGATGTTGTGATGAGTGATCTCCCGGTTGG

TTATTATCCAGACGATGAAACTGCTCGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCACTTAATGA

TTGAGCAATCCTTTAAGTATCTGAAGGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG

TCAGAATTTTTGAAGGCTTGGATTAAAGAACATGCACATGTTGCTGCAGTCATTACATTGCCTTCATCACTCTTTAAAGG

TGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAAACAAATACACCAACTTTTGTTTACCCCTTGGCTGATTTAGCAG

ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(132-286)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A6L2ZWA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYH	Streptococcus mutans UA140	49.677	99.678	0.495
comYH	Streptococcus mutans UA159	49.355	99.678	0.492

Detailed information NTG0748704