Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   QAY76_RS01970 Genome accession   NZ_CP123072
Coordinates   366920..368194 (-) Length   424 a.a.
NCBI ID   WP_000102731.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SW-MSSA62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 361920..373194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY76_RS01945 (QAY76_01935) hisS 362481..363743 (+) 1263 WP_061743889.1 histidine--tRNA ligase -
  QAY76_RS01950 (QAY76_01940) aspS 363759..365525 (+) 1767 WP_000044799.1 aspartate--tRNA ligase -
  QAY76_RS01960 (QAY76_01950) - 365858..365986 (+) 129 WP_001808039.1 hypothetical protein -
  QAY76_RS01965 (QAY76_01955) - 365986..366759 (+) 774 WP_000682646.1 ThiF family adenylyltransferase -
  QAY76_RS01970 (QAY76_01960) rarA 366920..368194 (-) 1275 WP_000102731.1 replication-associated recombination protein A Machinery gene
  QAY76_RS01975 (QAY76_01965) cymR 368279..368701 (+) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  QAY76_RS01980 (QAY76_01970) - 368801..368983 (+) 183 WP_000752909.1 CsbD family protein -
  QAY76_RS01985 (QAY76_01975) - 369023..369169 (+) 147 WP_000009238.1 SAS049 family protein -
  QAY76_RS01990 (QAY76_01980) - 369406..370419 (-) 1014 WP_411893009.1 LLM class flavin-dependent oxidoreductase -
  QAY76_RS01995 (QAY76_01985) - 370731..371873 (+) 1143 WP_000409167.1 cysteine desulfurase family protein -
  QAY76_RS02000 (QAY76_01990) mnmA 371874..372992 (+) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47236.83 Da        Isoelectric Point: 8.3526

>NTDB_id=745552 QAY76_RS01970 WP_000102731.1 366920..368194(-) (rarA) [Staphylococcus aureus strain SW-MSSA62]
MSTEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=745552 QAY76_RS01970 WP_000102731.1 366920..368194(-) (rarA) [Staphylococcus aureus strain SW-MSSA62]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAAAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTGTTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATTGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGATG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCAGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(175-253)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686