Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   SAGCMC97051_RS01560 Genome accession   NZ_AP020310
Coordinates   246888..247862 (+) Length   324 a.a.
NCBI ID   WP_001008574.1    Uniprot ID   A0AAV3JGK6
Organism   Streptococcus agalactiae strain GCMC97051     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 241888..252862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAGCMC97051_RS01510 (SAGCMC97051_02430) - 242292..242591 (+) 300 WP_000258211.1 STAS-like domain-containing protein -
  SAGCMC97051_RS01515 (SAGCMC97051_02440) - 242701..242901 (+) 201 WP_000076712.1 CsbD family protein -
  SAGCMC97051_RS01520 (SAGCMC97051_02450) - 242982..243233 (-) 252 WP_050196899.1 hypothetical protein -
  SAGCMC97051_RS01525 (SAGCMC97051_02460) - 243373..243519 (-) 147 WP_001030870.1 hypothetical protein -
  SAGCMC97051_RS01530 (SAGCMC97051_02470) - 243670..243879 (+) 210 WP_000424774.1 helix-turn-helix domain-containing protein -
  SAGCMC97051_RS01535 (SAGCMC97051_02480) - 243962..244786 (+) 825 WP_001125980.1 DUF3825 domain-containing protein -
  SAGCMC97051_RS01540 (SAGCMC97051_02490) - 245153..245698 (+) 546 WP_001870774.1 exotoxin beta-grasp domain-containing protein -
  SAGCMC97051_RS01545 (SAGCMC97051_02500) - 245706..245846 (+) 141 WP_161512414.1 hypothetical protein -
  SAGCMC97051_RS01550 (SAGCMC97051_02510) comGF 246002..246424 (+) 423 WP_001264244.1 competence type IV pilus minor pilin ComGF -
  SAGCMC97051_RS01555 (SAGCMC97051_02520) comGG 246402..246773 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG -
  SAGCMC97051_RS01560 (SAGCMC97051_02530) comYH 246888..247862 (+) 975 WP_001008574.1 class I SAM-dependent methyltransferase Machinery gene
  SAGCMC97051_RS01565 (SAGCMC97051_02540) - 247894..249087 (+) 1194 WP_000047534.1 acetate kinase -
  SAGCMC97051_RS01570 (SAGCMC97051_02550) - 249239..249445 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  SAGCMC97051_RS11560 - 249513..249641 (+) 129 WP_014959723.1 hypothetical protein -
  SAGCMC97051_RS01575 (SAGCMC97051_02560) - 249682..250137 (+) 456 WP_000905673.1 hypothetical protein -
  SAGCMC97051_RS01580 (SAGCMC97051_02570) - 250206..250871 (+) 666 WP_000008113.1 CPBP family intramembrane glutamic endopeptidase -
  SAGCMC97051_RS01585 (SAGCMC97051_02580) proC 250892..251662 (-) 771 WP_001865901.1 pyrroline-5-carboxylate reductase -
  SAGCMC97051_RS01590 (SAGCMC97051_02590) pepA 251732..252799 (-) 1068 WP_001281323.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37046.02 Da        Isoelectric Point: 4.5224

>NTDB_id=74529 SAGCMC97051_RS01560 WP_001008574.1 246888..247862(+) (comYH) [Streptococcus agalactiae strain GCMC97051]
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDMVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGSS
AQFIQEDAVRPQILKESDVIISDLPVGYYPNDGIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWSRENSHYSK
NMIK

Nucleotide


Download         Length: 975 bp        

>NTDB_id=74529 SAGCMC97051_RS01560 WP_001008574.1 246888..247862(+) (comYH) [Streptococcus agalactiae strain GCMC97051]
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAACCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATGGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTGGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTCTAGT
GCCCAATTTATCCAAGAGGATGCTGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGGTATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGCAGAGAAAATAGTCATTACTCAAAA
AATATGATAAAATAG

Domains

Predicted by InterProScan.

N-6 DNA Methylase (N6_Mtase)

(70-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

67.302

97.222

0.654
  comYH Streptococcus mutans UA140

67.302

97.222

0.654

Multiple sequence alignment