Detailed information NTG0074469

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: K6J86_RS06115
• Genome accession: NZ_AP024627
• Coordinates: 1194714..1195631 (+)
• Length: 305 a.a.
• NCBI ID: WP_003232954.1
• Uniprot ID: A0A9W5LHY5
• Organism: Bacillus subtilis strain BEST3136
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1189714..1200631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6J86_RS06100 (BsBEST3136_11480)	trpS	1190294..1191286 (-)	993	WP_003245134.1	tryptophan--tRNA ligase	-
K6J86_RS06105 (BsBEST3136_11490)	oppA	1192030..1193667 (+)	1638	WP_003232957.1	oligopeptide ABC transporter substrate-binding protein OppA	-
K6J86_RS06110 (BsBEST3136_11500)	oppB	1193775..1194710 (+)	936	WP_003245554.1	oligopeptide ABC transporter permease OppB	-
K6J86_RS06115 (BsBEST3136_11510)	amiD	1194714..1195631 (+)	918	WP_003232954.1	oligopeptide ABC transporter permease OppC	Regulator
K6J86_RS06120 (BsBEST3136_11520)	oppD	1195636..1196712 (+)	1077	WP_014906294.1	oligopeptide ABC transporter ATP-binding protein OppD	-
K6J86_RS06125 (BsBEST3136_11530)	oppF	1196714..1197631 (+)	918	WP_003245567.1	oligopeptide ABC transporter ATP-binding protein OppF	-
K6J86_RS06130 (BsBEST3136_11540)	yjbB	1197738..1198955 (+)	1218	WP_010886478.1	MFS transporter	-
K6J86_RS06135 (BsBEST3136_11550)	yjbC	1199120..1199698 (+)	579	WP_003244921.1	GNAT family N-acetyltransferase	-
K6J86_RS06140 (BsBEST3136_11560)	spx	1199879..1200274 (+)	396	WP_003245483.1	transcriptional regulator Spx	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 33621.12 Da
• Isoelectric Point: 10.2873

>NTDB_id=74469 K6J86_RS06115 WP_003232954.1 1194714..1195631(+) (amiD) [Bacillus subtilis strain BEST3136]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide

• Length: 918 bp

>NTDB_id=74469 K6J86_RS06115 WP_003232954.1 1194714..1195631(+) (amiD) [Bacillus subtilis strain BEST3136]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (121-305)

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-79)

3D structure

• AlphaFold DB: A0A9W5LHY5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	35.922	100	0.364
amiD	Streptococcus thermophilus LMD-9	35.922	100	0.364