Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QBD03_RS07520 Genome accession   NZ_CP122959
Coordinates   1513725..1514732 (-) Length   335 a.a.
NCBI ID   WP_280102663.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1508725..1519732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS07475 (QBD03_07475) - 1509110..1509274 (-) 165 WP_280102655.1 hypothetical protein -
  QBD03_RS07480 (QBD03_07480) - 1509289..1509513 (-) 225 WP_280102656.1 helix-turn-helix transcriptional regulator -
  QBD03_RS07485 (QBD03_07485) - 1509679..1510122 (+) 444 WP_280102657.1 helix-turn-helix transcriptional regulator -
  QBD03_RS07490 (QBD03_07490) - 1510131..1510565 (+) 435 WP_280102658.1 ImmA/IrrE family metallo-endopeptidase -
  QBD03_RS07495 (QBD03_07495) - 1510644..1511033 (+) 390 WP_280102659.1 hypothetical protein -
  QBD03_RS07500 (QBD03_07500) - 1511129..1511659 (+) 531 WP_280102660.1 Ltp family lipoprotein -
  QBD03_RS07510 (QBD03_07510) - 1511822..1512133 (+) 312 WP_280102661.1 hypothetical protein -
  QBD03_RS07515 (QBD03_07515) - 1512248..1513672 (+) 1425 WP_280102662.1 recombinase family protein -
  QBD03_RS07520 (QBD03_07520) comGB 1513725..1514732 (-) 1008 WP_280102663.1 type II secretion system F family protein Machinery gene
  QBD03_RS07525 (QBD03_07525) comGA 1514725..1515615 (-) 891 WP_280102664.1 competence type IV pilus ATPase ComGA Machinery gene
  QBD03_RS07530 (QBD03_07530) - 1515734..1516462 (-) 729 WP_280102665.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QBD03_RS07535 (QBD03_07535) - 1516553..1517053 (-) 501 WP_280102666.1 VanZ family protein -
  QBD03_RS07540 (QBD03_07540) - 1517150..1517524 (+) 375 WP_280102667.1 hypothetical protein -
  QBD03_RS07550 (QBD03_07550) - 1517711..1519111 (-) 1401 WP_280102668.1 hypothetical protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 38505.50 Da        Isoelectric Point: 9.5442

>NTDB_id=744657 QBD03_RS07520 WP_280102663.1 1513725..1514732(-) (comGB) [Latilactobacillus sakei strain HUP1]
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGRIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=744657 QBD03_RS07520 WP_280102663.1 1513725..1514732(-) (comGB) [Latilactobacillus sakei strain HUP1]
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGACGGCTATTAGAGAACGGTTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGTTGATTTTCCAACCGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGCCGGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATACG
GGGGGTACTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCGCATCATATTGTGGGGATTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGACTCAAGTTAACGGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTAACCTTGGTAGCGCAA
TTAGAGGTCGTACTCGCTTCGGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTGGCTAAGCATAATCTTACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACTTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(14-133)

Type II secretion system (T2SS), protein F (T2SSF)

(207-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Latilactobacillus sakei subsp. sakei 23K

99.403

100

0.994