Detailed information NTG0744625

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: QBD03_RS04835
• Genome accession: NZ_CP122959
• Coordinates: 993635..996163 (+)
• Length: 842 a.a.
• NCBI ID: WP_280103312.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain HUP1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 988635..1001163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QBD03_RS04815 (QBD03_04815)	-	989277..990575 (+)	1299	WP_280103309.1	pyrimidine-nucleoside phosphorylase	-
QBD03_RS04820 (QBD03_04820)	-	990812..992146 (+)	1335	WP_280103310.1	FAD-dependent oxidoreductase	-
QBD03_RS04825 (QBD03_04825)	-	992299..992958 (+)	660	WP_280103311.1	histidine phosphatase family protein	-
QBD03_RS04830 (QBD03_04830)	-	992970..993629 (+)	660	WP_112206353.1	tetratricopeptide repeat protein	-
QBD03_RS04835 (QBD03_04835)	recD/recD2/recDB	993635..996163 (+)	2529	WP_280103312.1	ATP-dependent RecD-like DNA helicase	Machinery gene
QBD03_RS04840 (QBD03_04840)	-	996206..997417 (+)	1212	WP_011374512.1	GNAT family N-acetyltransferase	-
QBD03_RS04845 (QBD03_04845)	-	997478..997717 (-)	240	WP_011374513.1	hypothetical protein	-
QBD03_RS04850 (QBD03_04850)	-	997982..998593 (+)	612	WP_016264992.1	LysE family transporter	-
QBD03_RS04855 (QBD03_04855)	-	998685..999797 (+)	1113	WP_280103313.1	DNA alkylation repair protein	-
QBD03_RS04860 (QBD03_04860)	-	999976..1000692 (+)	717	WP_016264994.1	MerR family transcriptional regulator	-

Sequence

Protein

• Length: 842 a.a.
• Molecular weight: 93415.64 Da
• Isoelectric Point: 5.0787

>NTDB_id=744625 QBD03_RS04835 WP_280103312.1 993635..996163(+) (recD/recD2/recDB) [Latilactobacillus sakei strain HUP1]
MAILETENTVDNKPTVTGTVQSVFYENPGNFFKILLIKIAHKTIDWHEPEIVVTGSFGEIKEDERYTFYGKVITHPKYGQ
QFQADNYQVDQPTTKTGLVAYLSGEKFAGIGQKTAEKIVDTLGLDAIDKILADSTVLAPLGLNDKKQATLVETLTINNGM
EQIIIGLNNYGFGSSMAYNIYQTYHEDTLKIIQENPYQLVADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELT
NQAGDTFTQAKPLLAASIQLMEQARNVAIDPNLVAEQLMVLAHDGKVVGDENRIYPNGLYNAEWQIANHLMRIENERDKI
SYPKHDLDKEIRRLEKRFKMSYDDVQKNAIKLAMTHRAFLLTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPI
LLAAPTGRAAKRMSETTGLPASTIHRLLGITGRENNPDIDSKELEGGLLIVDEMSMVDTYLFRSLIRAVPSNMQVVFVGD
KDQLPSVGAGQVFFDLLQSQAIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQKDRSFIQCSPYQIESVIKQVV
TKAKDRGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPKVDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQI
TGITYAKDSDDKMDELTIAFDSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVNQYQRMLKRNLLYTAVTRARS
LLILIGEPSAFDKAAKELSANRQTTLKERIISVFNGEKVSQAVKTASVGLTEAKPTVEKTTPVKEVVPEQLALVGDADDS
EETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTSAK

Nucleotide

• Length: 2529 bp

>NTDB_id=744625 QBD03_RS04835 WP_280103312.1 993635..996163(+) (recD/recD2/recDB) [Latilactobacillus sakei strain HUP1]
ATGGCGATTTTGGAAACAGAAAATACGGTCGATAATAAACCAACCGTTACCGGAACGGTCCAAAGTGTTTTTTACGAGAA
TCCCGGTAACTTTTTTAAGATTCTCTTGATTAAAATTGCCCATAAGACAATTGATTGGCACGAGCCAGAGATTGTCGTGA
CTGGTAGTTTTGGTGAGATTAAAGAAGACGAACGCTATACGTTTTATGGCAAAGTCATCACCCATCCTAAATACGGTCAA
CAATTTCAAGCTGACAACTATCAGGTTGACCAACCGACGACTAAGACTGGCTTAGTCGCCTATTTATCTGGCGAAAAATT
TGCCGGCATTGGTCAAAAAACGGCTGAGAAAATTGTCGATACCTTAGGATTAGACGCGATTGATAAGATCTTAGCGGACT
CAACTGTTTTAGCGCCGCTGGGTTTAAATGATAAGAAACAAGCGACGTTGGTTGAAACGCTGACGATTAACAATGGCATG
GAACAAATTATCATTGGGCTCAATAATTACGGCTTTGGGAGCTCGATGGCCTATAATATCTATCAGACTTATCACGAAGA
TACCTTGAAGATTATTCAAGAAAATCCTTATCAACTAGTGGCCGACATTGCCGGTATTGGGTTTAAACGAGCGGATAATT
TAGCTGAGAAGATTGGGTTTGCAGCCGATTCACCAGCGCGGATTCAAGGGGCGCTGATGCAAGCCTTGAACGAACTGACC
AATCAGGCCGGCGATACGTTTACCCAGGCGAAGCCGTTATTAGCAGCCAGCATTCAATTGATGGAACAGGCCCGGAACGT
GGCGATTGATCCGAATTTAGTGGCAGAGCAATTAATGGTCTTGGCACACGATGGCAAAGTCGTCGGCGATGAAAATCGGA
TTTATCCGAATGGTTTGTACAATGCGGAATGGCAAATTGCCAACCACTTGATGCGGATTGAAAATGAACGGGATAAAATT
AGTTATCCTAAACATGATCTGGATAAAGAAATTCGTCGGCTCGAAAAACGCTTTAAGATGAGCTATGATGATGTCCAAAA
AAATGCAATCAAATTAGCGATGACTCACAGAGCCTTTCTACTAACAGGGGGCCCTGGTACTGGGAAAACAACGATTATTA
ATGGGATTGTGACTTTATTTGCTGAGTTAAACGGTCTTTCGCTTGATATCAACGAATATAAAGACACACCATTCCCAATT
TTATTGGCGGCACCCACTGGACGGGCCGCTAAACGGATGAGCGAAACAACTGGCTTGCCAGCTAGCACGATTCATCGTTT
GTTAGGGATTACGGGCCGTGAAAATAATCCTGATATCGATAGTAAGGAACTGGAAGGTGGTTTATTAATTGTCGATGAAA
TGTCGATGGTTGATACGTACCTCTTTAGATCATTGATTCGAGCAGTGCCTAGCAATATGCAAGTCGTCTTTGTTGGTGAT
AAAGATCAGTTGCCATCAGTTGGCGCGGGGCAAGTCTTTTTTGATTTACTGCAGAGTCAGGCAATTCCGGCAATCGAACT
GCAACAAATCTACCGACAAGACGATGAGTCGACGATTATTCCGCTAGCCCATGAGATTAATCAGGGCCAACTACCAGCTG
ATCTACTCCAACCGCAAAAGGATCGGAGCTTTATTCAGTGCAGTCCTTATCAGATTGAATCAGTGATTAAACAAGTGGTG
ACTAAAGCAAAAGACCGGGGCTTTGAAACAAAAGACATTCAGGTGCTAGCACCGATGTATCGGGGCGCAGCCGGAATTGA
TCAATTAAATCCAATGATTCAAAATATTATGAATCCAAAGGTCGATGATCGTAAGAAACAAGTCAGTTTAGGCAACGTTC
ATTATCGGATTGGCGATAAGATTTTACATCTGGTTAACAGTCCGGAACTAAACGTCTTTAACGGTGAAATTGGGCAAATT
ACTGGGATTACGTATGCTAAAGATAGTGATGACAAGATGGACGAGTTAACGATTGCCTTTGATAGTACCGAAATTACCTA
TAAACGGACGGAATGGCATAAAATTACGTTAGCTTATTGTACGTCGATTCATAAGGCCCAAGGTTCTGAATTTGAAATGG
TAATTCTACCCTTGGTTAACCAATATCAACGGATGTTGAAACGAAACTTGTTGTATACAGCGGTGACACGGGCGCGGTCC
TTACTGATTTTAATTGGGGAACCAAGTGCCTTTGATAAGGCGGCCAAGGAACTCTCCGCAAACCGGCAAACAACGCTTAA
AGAACGGATTATCAGCGTCTTTAATGGTGAAAAAGTGAGCCAAGCGGTCAAAACCGCTAGTGTTGGCTTAACGGAAGCTA
AACCAACTGTTGAAAAAACAACGCCGGTTAAAGAAGTAGTGCCAGAACAATTGGCGTTAGTGGGCGATGCAGATGACAGT
GAAGAGACAATTCAAGAAGCACCTGCTAATTATGAATTAACACCAGCTTTGGTGAGTGGTCATCAGATTGATCCGATGAT
TGGGATGGCGGATTTAACACCGTACACATTCATGACAAGTGCTAAGTAG

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-660)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-725)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

• AAA domain (AAA_30) (342-547)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	46.933	89.074	0.418