Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   FYK59_RS12715 Genome accession   NZ_AP019853
Coordinates   2098755..2098964 (-) Length   69 a.a.
NCBI ID   WP_416046533.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SS3160     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2093755..2103964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK59_RS10925 (NGSS3160_21050) msrAB 2093920..2095488 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  FYK59_RS10930 (NGSS3160_21060) ftsY 2095634..2096734 (+) 1101 Protein_2123 signal recognition particle-docking protein FtsY -
  FYK59_RS10935 - 2097009..2097308 (-) 300 WP_175284744.1 hypothetical protein -
  FYK59_RS10940 (NGSS3160_21070) - 2097387..2098054 (-) 668 Protein_2125 opacity family porin -
  FYK59_RS12715 (NGSS3160_21080) pilE 2098755..2098964 (-) 210 WP_416046533.1 pilin Machinery gene
  FYK59_RS12720 (NGSS3160_21090) pilE 2098946..2099257 (-) 312 WP_126321990.1 pilin Machinery gene
  FYK59_RS12325 - 2100071..2100174 (-) 104 Protein_2128 pilin -
  FYK59_RS10955 - 2100312..2100653 (-) 342 Protein_2129 pilin -
  FYK59_RS12330 - 2100693..2101079 (-) 387 Protein_2130 pilin -
  FYK59_RS10965 (NGSS3160_21110) lpxC 2101221..2102144 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  FYK59_RS10970 (NGSS3160_21120) - 2102638..2103023 (-) 386 Protein_2132 pilin -
  FYK59_RS12335 (NGSS3160_21130) - 2103155..2103640 (-) 486 WP_125121586.1 pilin -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7437.36 Da        Isoelectric Point: 10.0439

>NTDB_id=74462 FYK59_RS12715 WP_416046533.1 2098755..2098964(-) (pilE) [Neisseria gonorrhoeae strain SS3160]
MASTGVNKEIQGKKLSLWAKRENGSVKWFCGQPVTRTDKANDDVTDDATATPSTCRQPAATRSLLAKAN

Nucleotide


Download         Length: 210 bp        

>NTDB_id=74462 FYK59_RS12715 WP_416046533.1 2098755..2098964(-) (pilE) [Neisseria gonorrhoeae strain SS3160]
ATGGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACACCAAGCA
CCTGCCGTCAACCTGCCGCGACCCGTTCTCTGCTAGCTAAGGCAAATTAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70.492

88.406

0.623
  pilE Neisseria gonorrhoeae MS11

61.194

97.101

0.594

Multiple sequence alignment