Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   QBD03_RS02185 Genome accession   NZ_CP122959
Coordinates   487628..489991 (+) Length   787 a.a.
NCBI ID   WP_280103113.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 482628..494991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS02160 (QBD03_02160) - 484638..484898 (+) 261 WP_011374097.1 IreB family regulatory phosphoprotein -
  QBD03_RS02165 (QBD03_02165) ruvX 484898..485341 (+) 444 WP_011374098.1 Holliday junction resolvase RuvX -
  QBD03_RS02170 (QBD03_02170) - 485391..485702 (+) 312 WP_011374099.1 DUF1292 domain-containing protein -
  QBD03_RS02175 (QBD03_02175) rnhC 485922..486839 (-) 918 WP_011374100.1 ribonuclease HIII -
  QBD03_RS02180 (QBD03_02180) - 487033..487572 (+) 540 WP_016264660.1 CvpA family protein -
  QBD03_RS02185 (QBD03_02185) mutS/mutS2 487628..489991 (+) 2364 WP_280103113.1 endonuclease MutS2 Machinery gene
  QBD03_RS02190 (QBD03_02190) trxA 490131..490442 (+) 312 WP_011374103.1 thioredoxin -
  QBD03_RS02195 (QBD03_02195) - 490643..490792 (+) 150 WP_035144601.1 teichoic acid D-Ala incorporation-associated protein DltX -
  QBD03_RS02200 (QBD03_02200) dltA 490816..492342 (+) 1527 WP_280103114.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  QBD03_RS02205 (QBD03_02205) dltB 492335..493543 (+) 1209 WP_011374105.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  QBD03_RS02210 (QBD03_02210) dltC 493573..493809 (+) 237 WP_011374106.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87598.82 Da        Isoelectric Point: 6.1605

>NTDB_id=744608 QBD03_RS02185 WP_280103113.1 487628..489991(+) (mutS/mutS2) [Latilactobacillus sakei strain HUP1]
MNHKILKTLEYDKIKQMLQGYAITAFGQEQIATLEPINEADLIQIRLNQTKDGVDIERLKGGIPLPQLENIRPHLKRIEI
GAMLNGSEFAQIGRVLRATSAVVRFFDDLEKDELELKALPELVAQFVTLPQLTERIRSSVADDGAILDTASTKLRGLRTG
LKQLEGQIRSRMASYTHGAKAKYLSDPIVTIRNDRYVIPVKQEYRGQFGGVVHDQSASGQTLFMEPQAIMELNNRLRQLQ
IEEQQEIERILAELSEAIMPERHNILANAELLGQLDFVNAKAQLAKALKATEPLINAENHVDLKQARHPLIDATKVVAND
IAIGADYQAIVVTGPNTGGKTITLKTLGLVQVMAQSGLFITAREESQVGVFSDIFADIGDEQSIEQNLSTFSAHMENIIQ
ILKQIDDRSLVLLDELGAGTDPQEGAALAIAILDQIGIVGANVVASTHYPELKIYGYNRPQTINASMEFDVATLQPTYRL
LIGVPGRSNAFDISTRLGLPNSIVDQAKQLMNDESQDLNNMITDLENQRKAAETEYQALRHELTEATDLHQQLSTAYQQF
FEDRETEMTKAKEKANAIVEKAEVKAAKVITKLRDMQMNQGAQIKENQLIDAKAELGQLHQETTLKKNKVLQRAKRRQTL
KVGDDVLVTSYGQRGTLIRQVDSKNWEVQMGIIKMKIANDDLEKQKVVEDNRPQRHVTTVNSGGARHVKAQLDLRGKRYE
EAMAEVDQYIDAALLANYQQVTIVHGKGTGAIRQGVQEYLQANRQVKKYEYAPANAGGNGATIVTFK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=744608 QBD03_RS02185 WP_280103113.1 487628..489991(+) (mutS/mutS2) [Latilactobacillus sakei strain HUP1]
ATGAATCATAAAATATTAAAAACATTAGAGTACGATAAAATTAAACAAATGTTGCAAGGTTATGCGATTACAGCATTTGG
TCAAGAACAAATAGCAACTTTAGAACCGATTAATGAAGCAGATCTGATTCAGATTCGCTTAAACCAAACCAAAGATGGTG
TTGATATCGAACGGTTAAAAGGTGGCATTCCATTGCCCCAACTGGAAAATATCAGACCACATTTAAAACGGATTGAAATC
GGTGCGATGTTAAATGGTAGTGAGTTCGCTCAAATCGGGCGCGTTTTACGTGCGACATCTGCCGTGGTTCGTTTCTTTGA
TGACCTGGAAAAAGACGAACTCGAATTAAAAGCCTTACCCGAATTAGTAGCGCAATTTGTTACGTTACCACAATTAACCG
AACGAATTAGAAGTTCGGTGGCTGATGATGGTGCCATTTTAGATACTGCTTCAACCAAGTTACGCGGTTTAAGAACGGGC
TTGAAGCAATTAGAAGGCCAGATTAGAAGTCGGATGGCCAGCTACACACACGGTGCCAAAGCTAAATATTTAAGTGATCC
GATCGTGACGATTCGTAATGACCGCTACGTTATTCCTGTTAAACAAGAATACCGCGGCCAATTTGGTGGTGTGGTACATG
ATCAAAGTGCCAGTGGTCAAACCTTATTCATGGAACCCCAAGCGATTATGGAATTAAATAACCGTTTGCGCCAATTACAA
ATTGAAGAGCAACAAGAAATTGAACGGATTTTGGCGGAATTATCAGAAGCCATCATGCCTGAACGCCACAATATTTTAGC
GAATGCTGAATTATTGGGTCAACTTGATTTCGTAAATGCTAAGGCCCAACTTGCGAAAGCTCTAAAAGCAACGGAACCTT
TAATCAATGCGGAAAACCATGTCGATTTAAAACAAGCACGGCATCCTTTAATTGATGCGACTAAAGTCGTGGCCAATGAT
ATTGCAATCGGTGCGGATTATCAAGCGATTGTGGTGACTGGTCCGAATACCGGTGGTAAAACCATCACACTTAAAACGTT
GGGCTTAGTCCAAGTGATGGCCCAATCAGGGTTATTCATTACTGCGCGTGAGGAAAGCCAAGTTGGTGTCTTCTCAGATA
TCTTTGCTGATATTGGTGACGAACAATCAATCGAACAAAACTTGAGTACTTTCTCAGCACACATGGAAAATATCATTCAG
ATTCTCAAACAGATTGATGATCGGAGTTTGGTGCTATTAGATGAATTAGGTGCCGGGACTGATCCGCAAGAAGGGGCCGC
TTTAGCGATTGCCATCTTGGATCAAATCGGGATTGTCGGAGCCAACGTGGTTGCGTCAACCCATTATCCTGAATTGAAGA
TTTATGGCTACAATCGACCACAAACAATTAATGCCAGCATGGAATTTGATGTGGCGACTTTACAGCCAACGTACCGTCTT
TTAATTGGGGTACCTGGTCGGAGTAATGCATTTGATATTTCAACGCGCCTAGGCTTACCAAATTCAATCGTCGATCAAGC
GAAACAGTTAATGAACGATGAAAGCCAAGATTTGAACAATATGATTACCGATCTTGAAAATCAACGTAAAGCGGCTGAAA
CAGAATACCAAGCACTACGTCATGAATTGACGGAAGCGACGGATCTACATCAACAACTCTCAACAGCTTATCAACAATTC
TTTGAAGATCGTGAAACGGAAATGACGAAGGCTAAGGAAAAAGCAAATGCGATTGTCGAAAAAGCTGAAGTCAAAGCTGC
TAAAGTCATCACTAAATTGCGTGACATGCAGATGAATCAAGGCGCACAGATTAAGGAAAATCAATTAATCGATGCCAAGG
CTGAATTAGGGCAATTACATCAAGAAACAACCTTGAAGAAAAATAAAGTGCTTCAACGGGCTAAGCGACGTCAAACGCTG
AAAGTTGGGGATGACGTATTGGTCACATCCTACGGCCAACGAGGCACTTTAATTCGCCAAGTCGATTCGAAAAATTGGGA
AGTCCAAATGGGCATCATCAAGATGAAGATCGCCAACGACGATTTAGAAAAGCAAAAAGTCGTTGAAGATAACCGACCAC
AACGCCATGTAACAACCGTTAATAGCGGTGGCGCACGCCACGTTAAAGCACAATTGGATTTACGCGGCAAACGCTATGAA
GAAGCAATGGCCGAAGTGGATCAATACATTGATGCGGCGCTATTAGCTAATTATCAACAAGTCACGATTGTCCATGGTAA
AGGGACTGGCGCGATTCGCCAAGGGGTTCAAGAATACCTCCAAGCTAACCGTCAAGTGAAGAAGTACGAATATGCACCAG
CTAATGCTGGTGGGAATGGTGCAACCATTGTGACGTTTAAGTAA

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(330-512)

Smr domain (Smr)

(712-787)

MutS2 and Smr-associated SH3 domain (MSSS)

(642-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

46.701

100

0.468