Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   QAD58_RS06805 Genome accession   NZ_CP122956
Coordinates   1405584..1405844 (-) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT112     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1400584..1410844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD58_RS06780 (QAD58_06785) - 1400861..1401994 (+) 1134 WP_286449048.1 hypothetical protein -
  QAD58_RS06785 (QAD58_06790) - 1402019..1403928 (-) 1910 Protein_1325 relaxase/mobilization nuclease domain-containing protein -
  QAD58_RS06790 (QAD58_06795) - 1404223..1404537 (+) 315 WP_000065285.1 hypothetical protein -
  QAD58_RS06795 (QAD58_06800) - 1404530..1404811 (+) 282 WP_286448266.1 YafQ family addiction module toxin -
  QAD58_RS06800 (QAD58_06805) - 1405086..1405583 (-) 498 Protein_1328 TraM recognition domain-containing protein -
  QAD58_RS06805 (QAD58_06810) comB3 1405584..1405844 (-) 261 WP_000602756.1 hypothetical protein Machinery gene
  QAD58_RS06810 (QAD58_06815) - 1405845..1406063 (-) 219 WP_286448267.1 TrbC/VirB2 family protein -
  QAD58_RS06815 (QAD58_06820) - 1406137..1408053 (-) 1917 WP_286448268.1 hypothetical protein -
  QAD58_RS06820 (QAD58_06825) - 1408064..1408838 (-) 775 Protein_1332 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=744582 QAD58_RS06805 WP_000602756.1 1405584..1405844(-) (comB3) [Helicobacter pylori strain BT112]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=744582 QAD58_RS06805 WP_000602756.1 1405584..1405844(-) (comB3) [Helicobacter pylori strain BT112]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453