Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   K5706_RS01405 Genome accession   NZ_AP019849
Coordinates   295143..295775 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio alfacsensis strain 04Ya249     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 290143..300775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5706_RS01385 (VA249_02230) - 290159..291370 (+) 1212 WP_128809980.1 aspartate aminotransferase family protein -
  K5706_RS01390 (VA249_02240) astA 291480..292499 (+) 1020 WP_221070756.1 arginine N-succinyltransferase -
  K5706_RS01395 (VA249_02250) astD 292528..293985 (+) 1458 WP_221070757.1 succinylglutamate-semialdehyde dehydrogenase -
  K5706_RS01400 (VA249_02260) - 294247..295041 (+) 795 WP_221070758.1 DUF1338 domain-containing protein -
  K5706_RS01405 (VA249_02270) crp 295143..295775 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  K5706_RS01410 (VA249_02280) - 296015..296884 (-) 870 WP_128812224.1 phosphoribulokinase -
  K5706_RS01415 (VA249_02290) - 297012..297224 (-) 213 WP_128809983.1 YheU family protein -
  K5706_RS01420 (VA249_02300) - 297273..298274 (-) 1002 WP_221070760.1 hydrolase -
  K5706_RS01425 (VA249_02310) - 298375..298853 (-) 479 Protein_229 TIGR02444 family protein -
  K5706_RS01430 (VA249_02320) - 298850..300769 (-) 1920 WP_221070764.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=74376 K5706_RS01405 WP_005381432.1 295143..295775(-) (crp) [Vibrio alfacsensis strain 04Ya249]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=74376 K5706_RS01405 WP_005381432.1 295143..295775(-) (crp) [Vibrio alfacsensis strain 04Ya249]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAATGGTTTCTTTCACACTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCAGAAACTTTGTACTACATCGTCAAAGGTTCTGTTGCGGTTCTTATCAAGG
ACGAAGAAGGTAAGGAGATGATCCTTTCTTACCTAAACCAAGGTGACTTCATTGGTGAGCTTGGCCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTGGCAGAAATTTCTTTCAAGAAGTTCCGTCAACTTAT
CCAAGTAAACCCAGATATCCTTATGCGCCTTTCTGCGCAGATGGCTCGTCGTCTTCAAGTTACTAGCCAAAAAGTAGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTAGCTAAACAACCAGATGCGATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATTGTTGGCTGTTCTCGTGAAACCGTTGGTCGTAT
CTTGAAAATGCTAGAAGAACAAAACCTAATCTCTGCACACGGTAAAACTATCGTTGTATACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment