Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GL2_RS11900 | Genome accession | NZ_AP019807 |
| Coordinates | 2732540..2733754 (-) | Length | 404 a.a. |
| NCBI ID | WP_143730856.1 | Uniprot ID | A0A510IXA0 |
| Organism | Microbulbifer sp. GL-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2727540..2738754
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GL2_RS11875 (GL2_24120) | argJ | 2728958..2730160 (+) | 1203 | WP_143730851.1 | bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ | - |
| GL2_RS11880 (GL2_24130) | mutT | 2730171..2730572 (+) | 402 | WP_143730852.1 | 8-oxo-dGTP diphosphatase MutT | - |
| GL2_RS11885 (GL2_24140) | yacG | 2730636..2730854 (-) | 219 | WP_143730853.1 | DNA gyrase inhibitor YacG | - |
| GL2_RS11890 (GL2_24150) | coaE | 2730929..2731534 (-) | 606 | WP_143730854.1 | dephospho-CoA kinase | - |
| GL2_RS11895 (GL2_24160) | pilD | 2731649..2732533 (-) | 885 | WP_143730855.1 | A24 family peptidase | Machinery gene |
| GL2_RS11900 (GL2_24170) | pilC | 2732540..2733754 (-) | 1215 | WP_143730856.1 | type II secretion system F family protein | Machinery gene |
| GL2_RS11905 (GL2_24180) | pilB | 2733911..2735623 (-) | 1713 | WP_143730857.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GL2_RS22215 (GL2_24190) | - | 2736010..2736426 (+) | 417 | WP_172621132.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| GL2_RS11915 | - | 2736513..2737376 (+) | 864 | WP_197736446.1 | sterol desaturase family protein | - |
Sequence
Protein
Download Length: 404 a.a. Molecular weight: 43496.17 Da Isoelectric Point: 9.6766
>NTDB_id=74219 GL2_RS11900 WP_143730856.1 2732540..2733754(-) (pilC) [Microbulbifer sp. GL-2]
MANAAAVAYIYKGVDSKGAKVQGEVSGTSPALVKAQLRKQGIIASRVQKKPKPLFGGGKKKVKPGDIALFTRQLATMMKA
GVPLVQSFEIVADGLDNQGLKDLIFKIRDDVASGTAFADALRKHPLYFDNLFCNLVASGEQSGALETMLDRIATYKEKTE
SLKAKIKKAMTYPLAVVVVAIIVTSILLIKVVPQFAETFAGFGADLPAFTQFVVNISEWMQAYWFIALFSIVFSVGGIIE
AKKRNRGVAQFFDKLMLKLPVLGPITYNSIAARFARTLSTTFASGVPLIDALKSVAGATGNCVYEEATLRIRDSVATGIP
LNSAMRQSGLYPVMLVQMTSIGEESGALDEMLSKAADFYEEAVDNAVDNLTTLLEPMIMSILGVLVGGLLIAMYLPIFQL
GKVI
MANAAAVAYIYKGVDSKGAKVQGEVSGTSPALVKAQLRKQGIIASRVQKKPKPLFGGGKKKVKPGDIALFTRQLATMMKA
GVPLVQSFEIVADGLDNQGLKDLIFKIRDDVASGTAFADALRKHPLYFDNLFCNLVASGEQSGALETMLDRIATYKEKTE
SLKAKIKKAMTYPLAVVVVAIIVTSILLIKVVPQFAETFAGFGADLPAFTQFVVNISEWMQAYWFIALFSIVFSVGGIIE
AKKRNRGVAQFFDKLMLKLPVLGPITYNSIAARFARTLSTTFASGVPLIDALKSVAGATGNCVYEEATLRIRDSVATGIP
LNSAMRQSGLYPVMLVQMTSIGEESGALDEMLSKAADFYEEAVDNAVDNLTTLLEPMIMSILGVLVGGLLIAMYLPIFQL
GKVI
Nucleotide
Download Length: 1215 bp
>NTDB_id=74219 GL2_RS11900 WP_143730856.1 2732540..2733754(-) (pilC) [Microbulbifer sp. GL-2]
ATGGCCAATGCTGCAGCAGTAGCGTATATCTATAAAGGCGTGGATAGCAAAGGGGCTAAGGTTCAGGGAGAAGTCAGCGG
GACCAGTCCGGCACTGGTAAAAGCGCAGCTACGCAAGCAGGGCATTATCGCCAGTCGCGTACAAAAAAAACCTAAACCGC
TATTTGGTGGGGGCAAGAAAAAAGTAAAACCGGGAGACATAGCCCTATTTACTCGGCAACTTGCCACTATGATGAAGGCT
GGTGTTCCCCTGGTGCAGAGTTTCGAAATCGTCGCGGATGGTCTCGATAACCAAGGATTGAAAGACCTGATTTTTAAAAT
TCGTGATGATGTAGCTTCTGGTACTGCTTTTGCCGATGCCCTACGTAAACACCCACTTTATTTCGATAACTTATTCTGCA
ATTTAGTAGCCTCCGGAGAGCAATCAGGTGCCCTTGAAACCATGCTCGACCGTATTGCCACTTATAAGGAAAAAACGGAA
TCACTCAAGGCGAAAATTAAAAAGGCAATGACGTACCCTCTTGCGGTAGTTGTGGTCGCGATCATTGTTACATCAATCCT
TTTAATAAAGGTTGTACCTCAGTTCGCTGAAACCTTTGCGGGCTTTGGTGCGGATTTGCCTGCATTTACTCAATTTGTAG
TTAACATCTCTGAATGGATGCAAGCCTACTGGTTTATAGCTCTATTTAGCATAGTTTTTTCAGTGGGGGGGATTATCGAA
GCTAAAAAGCGCAATAGAGGTGTAGCGCAATTTTTTGATAAGTTGATGCTTAAATTACCAGTGTTAGGGCCAATTACCTA
CAATTCTATTGCCGCTCGGTTTGCCAGGACCCTATCCACGACTTTTGCTTCAGGTGTTCCCTTAATTGATGCACTTAAAT
CCGTTGCAGGTGCCACTGGTAATTGTGTTTACGAAGAAGCAACTCTAAGAATACGCGATTCAGTTGCCACAGGTATCCCC
CTCAATAGCGCAATGCGCCAATCTGGTCTTTATCCCGTCATGCTGGTGCAGATGACCTCTATCGGTGAGGAATCCGGAGC
ACTGGATGAGATGCTTAGTAAAGCTGCAGACTTTTATGAAGAAGCTGTTGATAATGCCGTTGATAATTTAACCACGCTTC
TTGAGCCTATGATTATGTCTATTCTCGGTGTATTAGTTGGTGGCCTTCTTATTGCCATGTATCTTCCAATCTTCCAGCTC
GGAAAAGTAATCTAG
ATGGCCAATGCTGCAGCAGTAGCGTATATCTATAAAGGCGTGGATAGCAAAGGGGCTAAGGTTCAGGGAGAAGTCAGCGG
GACCAGTCCGGCACTGGTAAAAGCGCAGCTACGCAAGCAGGGCATTATCGCCAGTCGCGTACAAAAAAAACCTAAACCGC
TATTTGGTGGGGGCAAGAAAAAAGTAAAACCGGGAGACATAGCCCTATTTACTCGGCAACTTGCCACTATGATGAAGGCT
GGTGTTCCCCTGGTGCAGAGTTTCGAAATCGTCGCGGATGGTCTCGATAACCAAGGATTGAAAGACCTGATTTTTAAAAT
TCGTGATGATGTAGCTTCTGGTACTGCTTTTGCCGATGCCCTACGTAAACACCCACTTTATTTCGATAACTTATTCTGCA
ATTTAGTAGCCTCCGGAGAGCAATCAGGTGCCCTTGAAACCATGCTCGACCGTATTGCCACTTATAAGGAAAAAACGGAA
TCACTCAAGGCGAAAATTAAAAAGGCAATGACGTACCCTCTTGCGGTAGTTGTGGTCGCGATCATTGTTACATCAATCCT
TTTAATAAAGGTTGTACCTCAGTTCGCTGAAACCTTTGCGGGCTTTGGTGCGGATTTGCCTGCATTTACTCAATTTGTAG
TTAACATCTCTGAATGGATGCAAGCCTACTGGTTTATAGCTCTATTTAGCATAGTTTTTTCAGTGGGGGGGATTATCGAA
GCTAAAAAGCGCAATAGAGGTGTAGCGCAATTTTTTGATAAGTTGATGCTTAAATTACCAGTGTTAGGGCCAATTACCTA
CAATTCTATTGCCGCTCGGTTTGCCAGGACCCTATCCACGACTTTTGCTTCAGGTGTTCCCTTAATTGATGCACTTAAAT
CCGTTGCAGGTGCCACTGGTAATTGTGTTTACGAAGAAGCAACTCTAAGAATACGCGATTCAGTTGCCACAGGTATCCCC
CTCAATAGCGCAATGCGCCAATCTGGTCTTTATCCCGTCATGCTGGTGCAGATGACCTCTATCGGTGAGGAATCCGGAGC
ACTGGATGAGATGCTTAGTAAAGCTGCAGACTTTTATGAAGAAGCTGTTGATAATGCCGTTGATAATTTAACCACGCTTC
TTGAGCCTATGATTATGTCTATTCTCGGTGTATTAGTTGGTGGCCTTCTTATTGCCATGTATCTTCCAATCTTCCAGCTC
GGAAAAGTAATCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
63.384 |
98.02 |
0.621 |
| pilC | Acinetobacter baylyi ADP1 |
60.705 |
98.267 |
0.597 |
| pilC | Acinetobacter baumannii D1279779 |
60.453 |
98.267 |
0.594 |
| pilC | Legionella pneumophila strain ERS1305867 |
57.606 |
99.257 |
0.572 |
| pilG | Neisseria gonorrhoeae MS11 |
44.584 |
98.267 |
0.438 |
| pilG | Neisseria meningitidis 44/76-A |
44.332 |
98.267 |
0.436 |
| pilC | Vibrio cholerae strain A1552 |
41.667 |
98.02 |
0.408 |
| pilC | Vibrio campbellii strain DS40M4 |
41.31 |
98.267 |
0.406 |
| pilC | Thermus thermophilus HB27 |
36.675 |
100 |
0.371 |