Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilA4 | Type | Machinery gene |
| Locus tag | TthHC11_RS12010 | Genome accession | NZ_AP019801 |
| Coordinates | 1224096..1224491 (+) | Length | 131 a.a. |
| NCBI ID | WP_011173287.1 | Uniprot ID | - |
| Organism | Thermus thermophilus strain HC11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1219096..1229491
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TthHC11_RS06560 (TthHC11_12780) | pilA/pilA1 | 1219917..1220387 (+) | 471 | WP_011173283.1 | GspH/FimT family protein | Machinery gene |
| TthHC11_RS06565 (TthHC11_12790) | - | 1220442..1220915 (+) | 474 | WP_143591260.1 | GspH/FimT family protein | - |
| TthHC11_RS06570 (TthHC11_12800) | pilA/pilA2 | 1220933..1221493 (+) | 561 | WP_242003979.1 | type II secretion system protein | Machinery gene |
| TthHC11_RS06575 (TthHC11_12810) | pilA/pilA3 | 1221490..1222191 (+) | 702 | WP_024119434.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| TthHC11_RS06580 (TthHC11_12820) | comZ | 1222202..1223866 (+) | 1665 | WP_143591261.1 | pilus assembly PilX N-terminal domain-containing protein | Machinery gene |
| TthHC11_RS12010 (TthHC11_12830) | pilA/pilA4 | 1224096..1224491 (+) | 396 | WP_011173287.1 | type IV wide pilus major component PilA4 | Machinery gene |
| TthHC11_RS06590 | - | 1224548..1225840 (-) | 1293 | WP_143591263.1 | hypothetical protein | - |
| TthHC11_RS06595 (TthHC11_12850) | - | 1226097..1226609 (+) | 513 | WP_011173288.1 | hypothetical protein | - |
| TthHC11_RS06605 (TthHC11_12860) | - | 1226803..1227903 (+) | 1101 | WP_143590208.1 | transposase | - |
| TthHC11_RS06610 | - | 1227882..1228418 (+) | 537 | Protein_1281 | Uma2 family endonuclease | - |
| TthHC11_RS06615 (TthHC11_12880) | - | 1228415..1228972 (-) | 558 | WP_143591265.1 | Uma2 family endonuclease | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 13901.00 Da Isoelectric Point: 8.4696
>NTDB_id=74182 TthHC11_RS12010 WP_011173287.1 1224096..1224491(+) (pilA/pilA4) [Thermus thermophilus strain HC11]
MRNAKGFTLIELLIVIAIIAILAAVLIPNLLAARKRANDTVVTAYLNDAVKFQEMYQIDNNSYTSNQAALISLGLKSTPA
NVTFSIVSASANSYCMIAGHSGGTVWFAATPDKGVYKTNTAVTSSQPESCP
MRNAKGFTLIELLIVIAIIAILAAVLIPNLLAARKRANDTVVTAYLNDAVKFQEMYQIDNNSYTSNQAALISLGLKSTPA
NVTFSIVSASANSYCMIAGHSGGTVWFAATPDKGVYKTNTAVTSSQPESCP
Nucleotide
Download Length: 396 bp
>NTDB_id=74182 TthHC11_RS12010 WP_011173287.1 1224096..1224491(+) (pilA/pilA4) [Thermus thermophilus strain HC11]
ATGCGGAACGCGAAAGGCTTCACCCTGATTGAGCTCCTGATCGTCATCGCCATCATCGCCATCCTGGCGGCGGTGCTGAT
CCCGAACCTTCTGGCTGCACGGAAGAGGGCTAACGATACGGTGGTTACAGCTTACCTGAACGACGCGGTGAAGTTCCAGG
AGATGTACCAGATCGACAACAACTCCTACACCAGCAACCAGGCTGCGCTGATTTCCCTAGGGCTGAAATCCACCCCAGCC
AACGTGACGTTCAGTATCGTTAGCGCTTCTGCCAATAGCTACTGCATGATCGCAGGCCACAGCGGGGGCACCGTCTGGTT
CGCCGCCACTCCGGATAAAGGGGTGTACAAGACGAATACGGCCGTTACTTCTTCTCAACCTGAAAGCTGCCCATAA
ATGCGGAACGCGAAAGGCTTCACCCTGATTGAGCTCCTGATCGTCATCGCCATCATCGCCATCCTGGCGGCGGTGCTGAT
CCCGAACCTTCTGGCTGCACGGAAGAGGGCTAACGATACGGTGGTTACAGCTTACCTGAACGACGCGGTGAAGTTCCAGG
AGATGTACCAGATCGACAACAACTCCTACACCAGCAACCAGGCTGCGCTGATTTCCCTAGGGCTGAAATCCACCCCAGCC
AACGTGACGTTCAGTATCGTTAGCGCTTCTGCCAATAGCTACTGCATGATCGCAGGCCACAGCGGGGGCACCGTCTGGTT
CGCCGCCACTCCGGATAAAGGGGTGTACAAGACGAATACGGCCGTTACTTCTTCTCAACCTGAAAGCTGCCCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilA4 | Thermus thermophilus HB27 |
100 |
100 |
1 |