Detailed information NTG0074158

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: BsBEST3145_RS06095
• Genome accession: NZ_AP024625
• Coordinates: 1188394..1189311 (+)
• Length: 305 a.a.
• NCBI ID: WP_003232954.1
• Uniprot ID: A0A9W5LHY5
• Organism: Bacillus subtilis strain BEST3109
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1183394..1194311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BsBEST3145_RS06080 (BsBEST3109_11290)	trpS	1183974..1184966 (-)	993	WP_003245134.1	tryptophan--tRNA ligase	-
BsBEST3145_RS06085 (BsBEST3109_11300)	oppA	1185710..1187347 (+)	1638	WP_003232957.1	oligopeptide ABC transporter substrate-binding protein OppA	-
BsBEST3145_RS06090 (BsBEST3109_11310)	oppB	1187455..1188390 (+)	936	WP_003245554.1	oligopeptide ABC transporter permease OppB	-
BsBEST3145_RS06095 (BsBEST3109_11320)	amiD	1188394..1189311 (+)	918	WP_003232954.1	oligopeptide ABC transporter permease OppC	Regulator
BsBEST3145_RS06100 (BsBEST3109_11330)	oppD	1189316..1190392 (+)	1077	WP_014906294.1	oligopeptide ABC transporter ATP-binding protein OppD	-
BsBEST3145_RS06105 (BsBEST3109_11340)	oppF	1190394..1191311 (+)	918	WP_003245567.1	oligopeptide ABC transporter ATP-binding protein OppF	-
BsBEST3145_RS06110 (BsBEST3109_11350)	yjbB	1191418..1192635 (+)	1218	WP_010886478.1	MFS transporter	-
BsBEST3145_RS06115 (BsBEST3109_11360)	yjbC	1192800..1193378 (+)	579	WP_003244921.1	GNAT family N-acetyltransferase	-
BsBEST3145_RS06120 (BsBEST3109_11370)	spx	1193559..1193954 (+)	396	WP_003245483.1	transcriptional regulator Spx	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 33621.12 Da
• Isoelectric Point: 10.2873

>NTDB_id=74158 BsBEST3145_RS06095 WP_003232954.1 1188394..1189311(+) (amiD) [Bacillus subtilis strain BEST3109]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide

• Length: 918 bp

>NTDB_id=74158 BsBEST3145_RS06095 WP_003232954.1 1188394..1189311(+) (amiD) [Bacillus subtilis strain BEST3109]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (121-305)

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-79)

3D structure

• AlphaFold DB: A0A9W5LHY5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	35.922	100	0.364
amiD	Streptococcus thermophilus LMD-9	35.922	100	0.364