Detailed information NTG0741461

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: OIO59_RS09880
• Genome accession: NZ_CP107612
• Coordinates: 2082734..2083435 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594580.1
• Uniprot ID: A0A836YMN8
• Organism: Acinetobacter baumannii strain 1326927-1
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2077734..2088435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OIO59_RS09850 (OIO59_09850)	-	2078041..2078484 (-)	444	WP_031960450.1	SRPBCC family protein	-
OIO59_RS09855 (OIO59_09855)	tadA	2078554..2079057 (-)	504	WP_031960449.1	tRNA adenosine(34) deaminase TadA	-
OIO59_RS09860 (OIO59_09860)	-	2079064..2080188 (-)	1125	WP_109067466.1	enoyl-CoA hydratase/isomerase family protein	-
OIO59_RS09865 (OIO59_09865)	ung	2080185..2080898 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
OIO59_RS09870 (OIO59_09870)	-	2080949..2081545 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
OIO59_RS09875 (OIO59_09875)	gspK	2081775..2082734 (-)	960	WP_031960447.1	type II secretion system minor pseudopilin GspK	-
OIO59_RS09880 (OIO59_09880)	xcpW	2082734..2083435 (-)	702	WP_000594580.1	type II secretion system minor pseudopilin GspJ	Machinery gene
OIO59_RS09885 (OIO59_09885)	xcpV	2083435..2083815 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
OIO59_RS09890 (OIO59_09890)	-	2083805..2084359 (-)	555	WP_000841367.1	type II secretion system protein	-
OIO59_RS09895 (OIO59_09895)	-	2084369..2084977 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
OIO59_RS09900 (OIO59_09900)	-	2085015..2085788 (-)	774	WP_000497298.1	TatD family hydrolase	-
OIO59_RS09905 (OIO59_09905)	-	2085806..2086147 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
OIO59_RS09910 (OIO59_09910)	-	2086159..2087139 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
OIO59_RS09915 (OIO59_09915)	kdsB	2087151..2087912 (-)	762	WP_000680701.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26673.64 Da
• Isoelectric Point: 9.5501

>NTDB_id=741461 OIO59_RS09880 WP_000594580.1 2082734..2083435(-) (xcpW) [Acinetobacter baumannii strain 1326927-1]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=741461 OIO59_RS09880 WP_000594580.1 2082734..2083435(-) (xcpW) [Acinetobacter baumannii strain 1326927-1]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAAATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A836YMN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987