Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VroAM7_RS00840 Genome accession   NZ_AP019798
Coordinates   183461..184183 (-) Length   240 a.a.
NCBI ID   WP_143691691.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain AM7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 178461..189183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VroAM7_RS00820 (VroAM7_01490) - 178502..180700 (-) 2199 WP_232055366.1 VWA domain-containing protein -
  VroAM7_RS00825 (VroAM7_01500) cysQ 181187..182014 (-) 828 WP_045386207.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VroAM7_RS00830 (VroAM7_01510) nudE 182058..182627 (-) 570 WP_010445006.1 ADP compounds hydrolase NudE -
  VroAM7_RS00835 (VroAM7_01520) nfuA 182779..183363 (-) 585 WP_010445007.1 Fe-S biogenesis protein NfuA -
  VroAM7_RS00840 comF 183461..184183 (-) 723 WP_143691691.1 ComF family protein Machinery gene
  VroAM7_RS00845 (VroAM7_01530) bioH 184263..185033 (+) 771 WP_038883400.1 pimeloyl-ACP methyl ester esterase BioH -
  VroAM7_RS00850 (VroAM7_01540) - 185161..185625 (+) 465 WP_038883402.1 hypothetical protein -
  VroAM7_RS00855 (VroAM7_01550) - 185730..188048 (-) 2319 WP_143691692.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27624.88 Da        Isoelectric Point: 8.3668

>NTDB_id=74108 VroAM7_RS00840 WP_143691691.1 183461..184183(-) (comF) [Vibrio rotiferianus strain AM7]
MLSHHWQNIMFRLLGSQCALCQFPLESGQPSILRWCSSCTELLQPQPRCLRCGLQLHSTDSEQALVCGACLADPPPWQKL
YTLGDYSFPLAGEIQRFKDRRELWQVSGLCHQLAEQISDPAPLLTSVPIHWKRYLTRGFNQSAILTRYLAQNLSQAHDTQ
LFSKVRYTRSQRHYRKQLREENLAHAFKLNRIPEQKHIAIVDDVVTTGSTVRQLCQLLLEVGVERIDIYCICRTPVPNTI

Nucleotide


Download         Length: 723 bp        

>NTDB_id=74108 VroAM7_RS00840 WP_143691691.1 183461..184183(-) (comF) [Vibrio rotiferianus strain AM7]
ATGTTATCTCATCACTGGCAAAACATCATGTTTCGCCTTCTCGGTAGCCAATGTGCACTTTGCCAGTTCCCACTCGAAAG
TGGGCAACCTTCCATTCTGCGTTGGTGTTCCAGCTGTACTGAACTACTGCAACCTCAGCCAAGATGTTTGCGCTGCGGAC
TCCAACTTCACTCTACAGATTCAGAACAGGCATTAGTCTGCGGCGCTTGTTTAGCGGATCCACCACCCTGGCAAAAACTC
TACACCTTAGGTGATTACAGCTTCCCATTAGCTGGGGAAATTCAGCGATTTAAAGATCGCCGTGAACTATGGCAAGTGTC
GGGGCTTTGCCATCAACTTGCAGAGCAAATCTCGGACCCAGCCCCACTATTGACAAGCGTCCCCATTCATTGGAAACGCT
ACCTCACTAGGGGCTTCAATCAAAGTGCAATCTTAACTCGCTACCTTGCACAAAACTTATCGCAAGCACACGATACTCAA
CTTTTTAGCAAAGTGCGTTATACCCGCTCTCAACGACACTACCGAAAACAGCTTAGAGAAGAGAATCTCGCTCATGCCTT
TAAGCTAAATCGAATCCCAGAACAAAAACACATCGCCATTGTTGATGATGTGGTTACCACAGGCAGTACGGTCCGACAAT
TATGTCAATTACTACTTGAAGTTGGGGTCGAAAGAATTGATATTTACTGCATCTGCCGAACTCCTGTTCCAAATACGATC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(181-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

56.846

100

0.571
  comF Vibrio cholerae strain A1552

49.16

99.167

0.488

Multiple sequence alignment