Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   FPG73_RS07275 Genome accession   NZ_AP019794
Coordinates   1369905..1370795 (+) Length   296 a.a.
NCBI ID   WP_143586072.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA2-29     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1364905..1375795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPG73_RS07250 (TthAA229_14160) - 1365903..1366394 (+) 492 WP_143586973.1 DUF5317 domain-containing protein -
  FPG73_RS07255 (TthAA229_14170) - 1366449..1367453 (+) 1005 WP_143586066.1 homoisocitrate dehydrogenase -
  FPG73_RS07260 (TthAA229_14180) pilM 1367588..1368721 (+) 1134 WP_143586068.1 type IV pilus assembly protein PilM Machinery gene
  FPG73_RS07265 (TthAA229_14190) pilN 1368714..1369337 (+) 624 WP_011228637.1 competence protein Machinery gene
  FPG73_RS07270 (TthAA229_14200) pilO 1369327..1369908 (+) 582 WP_143586070.1 type 4a pilus biogenesis protein PilO Machinery gene
  FPG73_RS07275 (TthAA229_14210) pilW 1369905..1370795 (+) 891 WP_143586072.1 competence protein Machinery gene
  FPG73_RS07280 (TthAA229_14220) pilQ 1370792..1373065 (+) 2274 WP_143586074.1 secretin N-terminal domain-containing protein Machinery gene
  FPG73_RS07285 (TthAA229_14230) aroC 1373124..1374275 (+) 1152 WP_143586076.1 chorismate synthase -
  FPG73_RS07290 (TthAA229_14240) - 1374300..1374854 (+) 555 WP_143586078.1 shikimate kinase -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 30223.68 Da        Isoelectric Point: 4.5062

>NTDB_id=74080 FPG73_RS07275 WP_143586072.1 1369905..1370795(+) (pilW) [Thermus thermophilus strain AA2-29]
MKNAWQRLKEAWENLPRSTKLLLAALLLVGGVALWYVGLYLPAQVAETPTPVPSTQVIEAPPIPPLASQEEAKPQAEAPA
QEEAQAPASSQEQAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPASASSASRPAPVPEGPAVRVQTPAPAPQAAPATRP
IPGTSGALPAPKVLSPALSAPLPQARETPPRVAVPTALVEAPLPGPEEKGAEAEAPTPASPLERLVAEKGLRLSGTLLGP
VSVAILESKEGYLVVPAGSPIPGTEAVVRQVEEGSVTLALKEETLNLSLVQAGGGQ

Nucleotide


Download         Length: 891 bp        

>NTDB_id=74080 FPG73_RS07275 WP_143586072.1 1369905..1370795(+) (pilW) [Thermus thermophilus strain AA2-29]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGAAAACCTGCCCAGGTCCACCAAGCTCCTCCTGGCGGCCCTCCT
TCTCGTGGGGGGCGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAACGCCCACCCCGGTCCCCT
CCACGCAGGTCATCGAGGCCCCCCCGATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGAAGAGGCCCAGGCGCCCGCTTCTTCCCAAGAGCAGGCCCAGGCGCCCCCGCCTGCCCCCGTGGCCCGGGCCGAGCC
CCCGCCCCCGAATCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCTCCGGCCTCCGCCTCCTCCGCCTCCCGCC
CGGCGCCCGTCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCTGCCCCGGCCCCCCAGGCGGCCCCCGCCACCCGGCCC
ATCCCCGGGACCTCCGGCGCCCTCCCGGCGCCCAAGGTCCTCTCCCCCGCGCTGTCCGCCCCCCTGCCCCAGGCCAGGGA
AACGCCGCCTAGGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAAAGGGGCGGAGGCGG
AGGCCCCCACCCCGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGACCCTGCTCGGCCCC
GTGAGCGTGGCCATCCTGGAGAGCAAGGAGGGCTACCTCGTCGTCCCGGCGGGAAGCCCCATCCCCGGCACGGAGGCCGT
GGTGCGCCAGGTGGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAACCTGTCCCTCGTCCAAGCTGGAG
GTGGCCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

95.946

100

0.959

Multiple sequence alignment