Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QAY83_RS04690 Genome accession   NZ_CP122484
Coordinates   968157..969227 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SW-MSSA63     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 963157..974227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY83_RS04650 (QAY83_04640) gcvPA 963334..964680 (-) 1347 WP_411906134.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QAY83_RS04655 (QAY83_04645) gcvT 964700..965791 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  QAY83_RS04660 (QAY83_04650) - 965950..966474 (-) 525 WP_001015123.1 shikimate kinase -
  QAY83_RS04665 (QAY83_04655) - 966464..966610 (-) 147 WP_001789879.1 hypothetical protein -
  QAY83_RS04670 (QAY83_04660) comGF 966707..967204 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  QAY83_RS04675 (QAY83_04665) comGE 967122..967421 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QAY83_RS04680 (QAY83_04670) comGD 967408..967854 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QAY83_RS04685 (QAY83_04675) comGC 967832..968143 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QAY83_RS04690 (QAY83_04680) comGB 968157..969227 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QAY83_RS04695 (QAY83_04685) comGA 969199..970173 (-) 975 WP_217788802.1 competence type IV pilus ATPase ComGA Machinery gene
  QAY83_RS04700 (QAY83_04690) - 970198..971844 (-) 1647 WP_000277718.1 IS1182 family transposase -
  QAY83_RS04705 (QAY83_04695) - 972139..972762 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QAY83_RS04710 (QAY83_04700) - 972759..973088 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QAY83_RS04715 (QAY83_04705) - 973088..974074 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=739871 QAY83_RS04690 WP_000776422.1 968157..969227(-) (comGB) [Staphylococcus aureus strain SW-MSSA63]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=739871 QAY83_RS04690 WP_000776422.1 968157..969227(-) (comGB) [Staphylococcus aureus strain SW-MSSA63]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1