Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB4   Type   Machinery gene
Locus tag   FOY54_RS06980 Genome accession   NZ_AP019774
Coordinates   1345225..1347600 (+) Length   791 a.a.
NCBI ID   WP_006565382.1    Uniprot ID   -
Organism   Helicobacter suis strain SNTW101c     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1340225..1352600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY54_RS06960 (SNTW_13950) - 1341612..1342622 (+) 1011 WP_064429880.1 NADPH dehydrogenase -
  FOY54_RS06965 (SNTW_13960) - 1342654..1343553 (+) 900 WP_006564692.1 DNA adenine methylase -
  FOY54_RS06970 (SNTW_13970) - 1343576..1343902 (+) 327 Protein_1386 type II restriction endonuclease -
  FOY54_RS06975 (SNTW_13980) - 1344537..1345133 (+) 597 WP_064429881.1 outer membrane protein -
  FOY54_RS06980 (SNTW_13990) comB4 1345225..1347600 (+) 2376 WP_006565382.1 FtsK/SpoIIIE domain-containing protein Machinery gene
  FOY54_RS06985 (SNTW_14000) - 1347615..1348925 (+) 1311 WP_034377204.1 anaerobic C4-dicarboxylate transporter -
  FOY54_RS06990 (SNTW_14010) nusA 1348931..1350055 (-) 1125 WP_034377202.1 transcription termination factor NusA -
  FOY54_RS06995 (SNTW_14020) - 1350127..1350627 (-) 501 WP_006564510.1 hypothetical protein -
  FOY54_RS07000 (SNTW_14030) - 1350658..1351545 (+) 888 WP_064429882.1 aspartate carbamoyltransferase catalytic subunit -
  FOY54_RS07005 (SNTW_14040) - 1351537..1352457 (-) 921 WP_064429883.1 transaldolase -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 90575.02 Da        Isoelectric Point: 8.0923

>NTDB_id=73933 FOY54_RS06980 WP_006565382.1 1345225..1347600(+) (comB4) [Helicobacter suis strain SNTW101c]
MFHVLWDFLYNKTLDLLVGALPKVHCMTEENNILGLYDARFLLTKSEQLVGMLQIEGLSANAMAKEELQGYFQSKQNALD
QLQGVVLRVHTKRRKLQLKHDHHLSNPYAQSILNQFENKTIYENTYTLIFETTKSPIKDFLEQKKLEITTSASKQLYEHQ
AKLLSDCMSKITHALQPFKPKPLTATQALNFYAEFINGFFMPLKPTLGFLEDSYIATNVHFKKDYYIQEYHESRVHNRIL
GIKAYASKTLSSLVFTNLLHQEKELDIIFSIEPLETQKALSFIQEKIRLTISSLVKQELQEYYERIQAKQLCLQKIACNL
ILRHPHLETLNQETQEVLSLLSNGHLVGVVETLGLRPAYFSFFPGRLHLNPRLRCQSSQALACLLVFEKPNRGFKSNSWG
NMPLSVFKNLDHSPYLFNFHNQEVPHNTAQHSLHRANGHTMIIGATGTGKTTLMSFLMMSALKYDRLNILALDRAYGLFS
YTHYFSGTYNSGTHFKINPLSLKNSKENIDFLHSFYAAMLNIPLKPQNQLDIQASNAISNTLKTLYATLPPQSFSLQDFK
DAFIHTQALNLEPYLHNPLFNALEDSLEFKTPITTINMDAISTNPKDLGLLAYYIFYKILHQALEYNRGFLLFIDEFKSY
AQNSILNTHINTLITQARKANGVVVLALQDTNQLNSIQDAASFIKNMGTLIFYPQKHIDSTALSRDFGIKLSHMEQHFLE
NTPMHAHQILVKNMGDGSSSIIDVNLQSLGPYLHIFNSNAGLAKHLQGLMQSYPETWREVFLQSQDWEFAI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=73933 FOY54_RS06980 WP_006565382.1 1345225..1347600(+) (comB4) [Helicobacter suis strain SNTW101c]
ATGTTCCATGTGCTGTGGGATTTTTTATACAATAAAACCCTAGATTTATTAGTAGGTGCTTTGCCAAAAGTACATTGCAT
GACTGAGGAAAATAATATTCTAGGGCTATATGATGCGCGCTTTTTACTCACTAAGAGCGAACAGTTAGTAGGAATGCTAC
AAATTGAGGGCTTGAGTGCAAATGCGATGGCCAAAGAGGAGCTACAAGGGTATTTTCAAAGTAAGCAAAATGCTTTAGAT
CAGTTGCAAGGGGTTGTTTTGCGCGTACACACTAAACGCCGTAAATTACAACTCAAACATGACCACCATTTGAGTAACCC
TTATGCCCAATCCATCCTTAATCAATTTGAAAACAAAACTATTTATGAAAACACCTACACTCTTATTTTTGAAACCACTA
AAAGCCCTATTAAAGATTTTTTAGAACAAAAGAAGCTAGAGATCACTACAAGTGCCTCCAAACAGCTGTATGAACACCAA
GCTAAACTGCTCTCTGATTGCATGTCTAAAATAACCCATGCACTCCAGCCCTTTAAACCAAAACCCCTCACCGCCACGCA
AGCCCTAAATTTCTACGCAGAATTTATCAACGGCTTTTTTATGCCTCTTAAGCCTACTTTGGGTTTTTTAGAAGATAGTT
ACATTGCGACTAATGTACATTTTAAAAAAGATTATTATATTCAAGAATATCATGAATCGCGCGTGCATAACCGCATTTTG
GGGATTAAGGCCTATGCTAGTAAAACTCTAAGCTCTTTAGTCTTTACAAACTTATTACACCAAGAAAAAGAATTAGACAT
TATTTTTTCTATAGAGCCTTTAGAGACGCAAAAAGCCCTGTCCTTTATCCAAGAAAAAATCCGTTTGACCATTAGCTCAC
TAGTCAAGCAAGAGTTACAAGAATATTATGAGCGTATCCAAGCCAAACAGCTTTGTTTACAAAAAATTGCCTGTAATCTT
ATTCTTAGACACCCCCATTTAGAAACACTCAACCAAGAAACCCAAGAGGTTTTAAGCCTTTTATCTAATGGACATCTAGT
AGGCGTTGTAGAAACCTTAGGACTTAGACCCGCTTATTTTTCCTTCTTTCCCGGGCGTTTGCATTTAAACCCTCGTTTGC
GTTGCCAAAGTTCTCAAGCCCTAGCTTGTTTACTCGTCTTTGAAAAGCCAAATCGTGGTTTTAAATCAAACTCTTGGGGA
AACATGCCCCTTAGTGTGTTTAAAAACCTCGATCATTCGCCCTATCTTTTTAATTTCCATAACCAAGAAGTACCACACAA
TACAGCACAACATAGTTTACATAGGGCTAATGGGCATACCATGATTATTGGCGCTACAGGAACGGGTAAGACGACTTTAA
TGAGTTTTTTAATGATGAGTGCGCTTAAATACGATCGGCTTAATATTCTAGCTTTAGATCGCGCCTATGGGTTGTTTTCC
TACACCCATTATTTTAGCGGCACTTACAACTCAGGTACGCATTTTAAAATCAACCCCCTATCTCTTAAAAACTCCAAAGA
AAATATAGATTTTTTACACTCTTTTTATGCGGCTATGCTAAATATCCCCCTAAAGCCACAAAACCAGCTAGATATTCAAG
CCAGTAACGCCATTTCTAACACCCTTAAAACTTTATACGCTACCTTGCCCCCTCAAAGTTTTTCTTTGCAAGATTTTAAA
GACGCATTCATTCATACCCAAGCTTTAAACCTAGAACCCTATTTACATAACCCGCTTTTTAACGCCTTAGAAGATAGCCT
AGAATTTAAAACGCCTATCACAACTATTAACATGGACGCTATTAGTACTAATCCTAAAGATTTAGGGCTTTTGGCTTACT
ATATTTTCTATAAGATTTTACACCAAGCCCTAGAATACAACCGCGGCTTTTTACTCTTTATAGATGAATTTAAAAGTTAT
GCGCAAAATTCTATCCTAAACACACATATTAACACTTTAATCACCCAAGCTAGAAAGGCTAATGGGGTGGTGGTTTTGGC
CTTGCAAGATACAAACCAACTTAACTCTATCCAAGATGCGGCTAGTTTTATTAAAAACATGGGTACTTTGATCTTTTATC
CACAAAAACACATTGATAGTACAGCCCTTAGCCGTGATTTTGGAATCAAACTTAGCCACATGGAACAACACTTTTTAGAA
AACACCCCCATGCATGCCCACCAAATTCTAGTTAAAAACATGGGCGATGGTAGTTCTAGTATTATTGATGTTAATTTACA
ATCTCTAGGCCCTTATTTACATATTTTTAATTCCAATGCAGGCTTAGCCAAACATTTACAGGGTCTAATGCAAAGCTATC
CTGAGACTTGGCGAGAGGTGTTTTTGCAATCTCAAGATTGGGAGTTTGCAATTTAA

Domains

Predicted by InterproScan.

FtsK/SpoIIIE family (FtsK_SpoIIIE)

(397-464)

CagE, TrbE, VirB family, component of type IV transporter system (CagE_TrbE_VirB)

(178-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB4 Helicobacter pylori 26695

51.263

100

0.513

Multiple sequence alignment