Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   FOY54_RS06445 Genome accession   NZ_AP019774
Coordinates   1250433..1251206 (-) Length   257 a.a.
NCBI ID   WP_040499194.1    Uniprot ID   A0A6J4CZL4
Organism   Helicobacter suis strain SNTW101c     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1245433..1256206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY54_RS06430 (SNTW_12870) - 1247132..1247767 (-) 636 WP_064429860.1 SoxW family protein -
  FOY54_RS06435 (SNTW_12880) hemH 1247758..1248777 (-) 1020 WP_006564431.1 ferrochelatase -
  FOY54_RS06440 (SNTW_12890) gatB 1248998..1250428 (+) 1431 WP_034376900.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  FOY54_RS06445 (SNTW_12900) comB8 1250433..1251206 (-) 774 WP_040499194.1 type IV secretion system protein Machinery gene
  FOY54_RS06450 (SNTW_12910) - 1251347..1252354 (-) 1008 WP_006564433.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  FOY54_RS06455 (SNTW_12920) - 1252464..1253150 (+) 687 WP_006565316.1 Bax inhibitor-1/YccA family protein -
  FOY54_RS06460 (SNTW_12930) - 1253134..1253562 (+) 429 WP_231102796.1 thiamine-phosphate pyrophosphorylase -
  FOY54_RS06470 (SNTW_12950) - 1254116..1254826 (+) 711 WP_006564435.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  FOY54_RS06475 (SNTW_12960) - 1254823..1255932 (+) 1110 WP_050780196.1 DUF354 domain-containing protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29505.06 Da        Isoelectric Point: 9.0939

>NTDB_id=73931 FOY54_RS06445 WP_040499194.1 1250433..1251206(-) (comB8) [Helicobacter suis strain SNTW101c]
MDSKEQDLLKEQLFHELYLKIQENQAKLEQEIASKIESLALSHLDLNSVFRIERRNSAMAYKLVVLLSLISLALTVALII
LLPLKQTQHHFIDFANQDKHYAIIQRADANLASNEALVRSLVGQYILNRESINHIDDQNRYEVVRLQSNSSVWHVFESLV
ASKNSIYTAPKMDRDIHIVNIALLKHSKNQNIAHVQIVAKLFDAGQLIQQKRYNIVLSFTFLPPPSFDTTMMPKNPTGFQ
VSRYSVTEMQDLKTLKP

Nucleotide


Download         Length: 774 bp        

>NTDB_id=73931 FOY54_RS06445 WP_040499194.1 1250433..1251206(-) (comB8) [Helicobacter suis strain SNTW101c]
ATGGATTCTAAGGAGCAAGACCTCCTCAAAGAACAACTTTTTCACGAATTGTATTTAAAAATCCAAGAGAATCAAGCCAA
ATTAGAACAGGAAATAGCTAGTAAGATTGAAAGTTTGGCTTTATCACACCTAGATTTAAATAGTGTGTTTCGGATTGAAA
GACGCAATAGTGCTATGGCTTATAAACTTGTGGTGCTATTAAGTCTGATTAGTTTAGCTTTAACCGTTGCGTTAATTATT
CTCTTGCCTCTTAAACAAACCCAGCACCATTTTATTGACTTTGCTAACCAAGATAAACACTATGCCATTATCCAAAGAGC
TGATGCAAATTTAGCCAGTAACGAAGCTTTAGTGCGTTCATTAGTAGGCCAATACATTTTAAACCGCGAATCTATTAACC
ACATTGACGATCAAAACCGCTATGAAGTGGTGCGTTTACAAAGTAACTCGTCAGTTTGGCATGTTTTTGAAAGTCTAGTC
GCCTCTAAAAATAGCATTTACACCGCCCCTAAAATGGATCGCGATATTCATATCGTCAATATTGCCTTGCTTAAACATTC
TAAGAATCAAAATATCGCCCATGTACAAATTGTGGCTAAACTCTTTGATGCGGGGCAATTAATCCAGCAAAAGCGCTATA
ACATCGTGCTTAGCTTTACTTTTTTGCCCCCGCCTTCTTTTGATACAACCATGATGCCTAAAAACCCTACTGGCTTTCAA
GTCAGCCGCTACAGCGTAACTGAAATGCAAGATCTAAAAACCCTCAAACCCTAA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(54-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6J4CZL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

52.033

95.72

0.498

Multiple sequence alignment