Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   FOY54_RS04540 Genome accession   NZ_AP019774
Coordinates   877260..877526 (-) Length   88 a.a.
NCBI ID   WP_034376157.1    Uniprot ID   A0A6J4CZW2
Organism   Helicobacter suis strain SNTW101c     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 872260..882526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY54_RS04520 (SNTW_09040) - 873063..875372 (-) 2310 WP_231102894.1 TonB-dependent receptor family protein -
  FOY54_RS04525 (SNTW_09050) fliW 875516..875923 (+) 408 WP_006564742.1 flagellar assembly protein FliW -
  FOY54_RS04530 (SNTW_09060) murG 875925..877007 (+) 1083 WP_064430110.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  FOY54_RS04535 (SNTW_09070) comB3 876990..877259 (-) 270 WP_034376154.1 hypothetical protein Machinery gene
  FOY54_RS04540 (SNTW_09080) comB2 877260..877526 (-) 267 WP_034376157.1 TrbC/VirB2 family protein Machinery gene
  FOY54_RS04545 (SNTW_09090) - 877820..878605 (+) 786 WP_006565183.1 HrcA family transcriptional regulator -
  FOY54_RS04550 (SNTW_09100) grpE 878602..879132 (+) 531 WP_006565184.1 nucleotide exchange factor GrpE -
  FOY54_RS04555 (SNTW_09110) dnaK 879154..881019 (+) 1866 WP_040499279.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10204.24 Da        Isoelectric Point: 7.9878

>NTDB_id=73929 FOY54_RS04540 WP_034376157.1 877260..877526(-) (comB2) [Helicobacter suis strain SNTW101c]
MRFLWVFCVVFALLRAEGSDSFFQAIEEQLQSNTAKGILMVIFIGIAFYVWRNLDRWRDILFTVLGVVLGIMLFFKAPAL
ASWFMGLF

Nucleotide


Download         Length: 267 bp        

>NTDB_id=73929 FOY54_RS04540 WP_034376157.1 877260..877526(-) (comB2) [Helicobacter suis strain SNTW101c]
GTGCGGTTTTTATGGGTTTTTTGTGTGGTTTTTGCCCTTTTAAGGGCTGAGGGGAGCGATAGTTTTTTTCAAGCCATTGA
AGAACAACTCCAAAGCAATACGGCTAAGGGTATTTTAATGGTGATCTTTATTGGCATTGCCTTTTATGTGTGGCGCAATT
TAGATCGCTGGCGGGATATTTTATTCACGGTCTTAGGCGTAGTTTTGGGAATCATGCTTTTTTTCAAAGCCCCCGCTTTA
GCTTCGTGGTTTATGGGACTCTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(17-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6J4CZW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

74.667

85.227

0.636

Multiple sequence alignment