Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OFO16_RS00600 Genome accession   NZ_CP107282
Coordinates   133522..134244 (-) Length   240 a.a.
NCBI ID   WP_263837809.1    Uniprot ID   -
Organism   Vibrio natriegens strain PWH3a     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 128522..139244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS00575 (OFO16_00575) - 129702..130193 (+) 492 WP_263837807.1 type II secretion system protein M -
  OFO16_RS00580 (OFO16_00580) - 130195..130956 (+) 762 WP_263837808.1 type II secretion system protein N -
  OFO16_RS00585 (OFO16_00585) cysQ 131242..132069 (-) 828 WP_020335696.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OFO16_RS00590 (OFO16_00590) nudE 132111..132680 (-) 570 WP_020335697.1 ADP compounds hydrolase NudE -
  OFO16_RS00595 (OFO16_00595) nfuA 132841..133425 (-) 585 WP_014230546.1 Fe-S biogenesis protein NfuA -
  OFO16_RS00600 (OFO16_00600) comF 133522..134244 (-) 723 WP_263837809.1 ComF family protein Machinery gene
  OFO16_RS00605 (OFO16_00605) bioH 134329..135096 (+) 768 WP_263837810.1 pimeloyl-ACP methyl ester esterase BioH -
  OFO16_RS00610 (OFO16_00610) - 135208..135672 (+) 465 WP_263837811.1 ATP-dependent Lon protease -
  OFO16_RS00615 (OFO16_00615) - 135755..138085 (-) 2331 WP_263837812.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27522.74 Da        Isoelectric Point: 8.8733

>NTDB_id=739251 OFO16_RS00600 WP_263837809.1 133522..134244(-) (comF) [Vibrio natriegens strain PWH3a]
MLSHHWQNIMHRVLGSQCGLCRLPLKKSQSPNALRWCSHCFQYLNPIRRCQHCGLAMLETERSDTVCGECLAEPPPWQRL
ITLGDYAFPLSREVQRFKDHGESWHIDALTQLLSSRITAPAPIITSVPLHWRRYLSRGFNQSDVLARHLAAHLHRRFDPA
VFRRIQYADSQRGHTKNQREQNLQGAFILNKKPMDKHVAIVDDVVTTGSTVRQLCQLLLEVGVESIDIYCICRTPAPTSL

Nucleotide


Download         Length: 723 bp        

>NTDB_id=739251 OFO16_RS00600 WP_263837809.1 133522..134244(-) (comF) [Vibrio natriegens strain PWH3a]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTGCTCGGTAGTCAATGTGGTCTGTGCAGGCTACCACTGAAAAA
ATCACAATCACCGAACGCGCTTCGTTGGTGTAGCCATTGTTTTCAGTATCTTAATCCGATTAGAAGATGCCAGCATTGCG
GTTTGGCTATGCTGGAAACAGAAAGGAGCGACACGGTGTGTGGCGAGTGCTTGGCCGAACCACCGCCCTGGCAGCGACTC
ATCACTCTCGGTGACTATGCGTTTCCTCTGTCACGTGAGGTTCAACGCTTTAAGGATCATGGCGAGAGTTGGCACATCGA
CGCGCTGACTCAGTTACTTTCCTCTCGTATTACAGCCCCTGCTCCAATTATCACCAGCGTTCCATTGCACTGGCGTCGCT
ATTTATCGCGTGGATTCAATCAAAGTGATGTACTTGCCAGACACTTGGCAGCCCATCTGCATCGCCGTTTTGACCCTGCA
GTATTTCGTCGTATCCAATACGCGGACTCTCAGCGTGGCCATACTAAAAACCAACGAGAGCAAAACTTGCAAGGTGCGTT
TATCCTCAATAAAAAGCCGATGGATAAACACGTGGCGATTGTCGATGATGTCGTTACAACGGGCAGTACAGTACGACAAT
TATGCCAATTACTACTTGAAGTTGGTGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTACTTCGCTC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

68.88

100

0.692
  comF Vibrio cholerae strain A1552

50.211

98.75

0.496