Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OGM52_RS23990 Genome accession   NZ_CP107120
Coordinates   4852412..4852948 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain S12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4847412..4857948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGM52_RS23970 (OGM52_23945) soxR 4849141..4849605 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  OGM52_RS23975 (OGM52_23950) soxS 4849691..4850014 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  OGM52_RS23980 (OGM52_23955) pdeC 4850017..4851603 (-) 1587 WP_001296644.1 c-di-GMP phosphodiesterase PdeC -
  OGM52_RS23985 (OGM52_23960) yjcB 4852032..4852313 (+) 282 WP_001296643.1 YjcB family protein -
  OGM52_RS23990 (OGM52_23965) ssb 4852412..4852948 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OGM52_RS23995 (OGM52_23970) uvrA 4853203..4856025 (+) 2823 WP_000357755.1 excinuclease ABC subunit UvrA -
  OGM52_RS24000 (OGM52_23975) yjbR 4856060..4856392 (-) 333 WP_136503802.1 MmcQ/YjbR family DNA-binding protein -
  OGM52_RS24005 (OGM52_23980) yjbQ 4856396..4856812 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OGM52_RS24010 (OGM52_23985) aphA 4856923..4857636 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=738149 OGM52_RS23990 WP_000168305.1 4852412..4852948(-) (ssb) [Escherichia coli strain S12]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=738149 OGM52_RS23990 WP_000168305.1 4852412..4852948(-) (ssb) [Escherichia coli strain S12]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489