Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   OD347_RS13000 Genome accession   NZ_CP107079
Coordinates   2583268..2585625 (-) Length   785 a.a.
NCBI ID   WP_071347950.1    Uniprot ID   A0AAP7N5M3
Organism   Bacillus velezensis strain LT-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2578268..2590625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS12980 - 2578350..2579903 (+) 1554 WP_088613189.1 SH3 domain-containing protein -
  OD347_RS12985 dtd 2579931..2580374 (-) 444 WP_088613190.1 D-aminoacyl-tRNA deacylase -
  OD347_RS12990 relA 2580387..2582591 (-) 2205 WP_065522681.1 GTP diphosphokinase -
  OD347_RS12995 - 2582750..2583262 (-) 513 WP_013353031.1 adenine phosphoribosyltransferase -
  OD347_RS13000 recJ 2583268..2585625 (-) 2358 WP_071347950.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  OD347_RS13005 - 2585681..2586007 (-) 327 WP_088613191.1 lipopolysaccharide assembly LapA domain-containing protein -
  OD347_RS13010 - 2586071..2586568 (-) 498 WP_045510314.1 cation:proton antiporter regulatory subunit -
  OD347_RS13015 secDF 2586699..2588918 (-) 2220 WP_013353035.1 protein translocase subunit SecDF -
  OD347_RS13020 - 2588955..2589251 (-) 297 WP_013353036.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87323.78 Da        Isoelectric Point: 4.9545

>NTDB_id=737961 OD347_RS13000 WP_071347950.1 2583268..2585625(-) (recJ) [Bacillus velezensis strain LT-2]
MLASKMRWEIQQPDKEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDADFYDPYELKGMREAVDRIKLAVSRG
EPIMIYGDYDADGVTSTSVMLTALRQLSANVDFYIPDRFTEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAEVAKEL
GLDVIITDHHEPGPELPDVFAIIHPKQPGCSYPFKELAGVGVAFKLAHALTGSLPEAMLDLAAIGTVADLVPLHDENRLI
ASLGIERLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGRIEQADPAVHLLMTDDQFEAEELASDIDRLNKE
RQKMVKTMTEEAVEMVQQQGGNPSAIVVAKAGWNPGVVGIVASKLAERFYRPAVVLGIDEEQGIAKGSARSIRGFNLFTS
LSQCRDILPHFGGHPMAAGMTLKAEDVADLRDRLNQMAEETLTEEDFIPVQEVDLVCGVEDITVESITELNMLSPFGMLN
PKPHVMVENAVLDEVRLIGANKNHVKMTVKNDSAVLDCVGFNKGELEAGIVPGSTISIVGEMSINEWNNRKKPQLMIKDA
AVPEWQLFDIRGKRMWEDTVTALPKEKRVLISFNEKTAQKLRAELSGELAEITSESEAEALPLDGKYAVFLDVPPSADRL
QRLLDGKKPERIYFVFINHEEHFLSSFPSRNDFKWFYAFLLKRGTFDLGRHGSELARHRGWSIDTINFMTKVFFDLGFVK
IEDGVLSVVSGAKKRDLADSQTYQVKQQLMELDQKLNYSAAHELKEWLNKLMNQGSEAYESTRRT

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=737961 OD347_RS13000 WP_071347950.1 2583268..2585625(-) (recJ) [Bacillus velezensis strain LT-2]
ATGTTAGCGTCAAAAATGCGCTGGGAAATCCAGCAGCCGGATAAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCGCTGCTTGTAAAAAGAGGTTTTGATACTGCCGAAAGTGCAAGGCTGTTTTTACATACAAAGG
ATGCAGACTTTTATGACCCGTATGAATTAAAGGGAATGCGGGAAGCAGTTGATCGGATAAAGCTGGCGGTTTCCCGCGGG
GAACCGATTATGATTTACGGAGATTACGATGCAGACGGCGTTACAAGCACGTCAGTGATGCTGACGGCGCTCAGACAGCT
GTCAGCGAACGTTGACTTTTATATTCCCGACCGTTTCACAGAAGGCTACGGCCCGAATGAACAAGCTTTCCGCTCCATAA
AAGAGCGGGGATTTTCGCTTATCATTACAGTGGATACGGGTATCGCCGCCGTTCATGAAGCTGAAGTCGCAAAAGAGCTT
GGCTTAGACGTCATTATTACCGACCACCATGAGCCGGGACCCGAGCTTCCTGACGTATTTGCGATTATCCACCCGAAGCA
GCCGGGCTGCAGCTATCCGTTTAAAGAATTGGCCGGCGTCGGTGTGGCGTTTAAGCTTGCCCACGCGCTTACGGGTTCTC
TGCCGGAAGCTATGTTGGACCTGGCGGCGATCGGTACGGTTGCTGATCTGGTGCCGCTGCATGATGAAAACAGATTAATA
GCGTCGCTTGGGATCGAAAGGCTTCGGACGACAAATCGGCCGGGTCTCAAAGCTCTGATTAAGCTTTCCGGCGGGGATAT
CGGACAAGCTGATGAGGAAACGATCGGGTTTCAGGTCGCACCGAGGCTGAATGCCGTCGGAAGAATAGAACAGGCTGATC
CCGCCGTGCACCTGTTGATGACCGATGACCAGTTTGAAGCGGAGGAGCTGGCTTCGGATATTGACCGGCTGAATAAAGAG
CGGCAGAAAATGGTGAAAACGATGACCGAAGAGGCTGTTGAAATGGTTCAGCAGCAAGGCGGAAACCCTTCTGCCATTGT
CGTGGCAAAAGCCGGCTGGAATCCGGGAGTTGTCGGTATTGTGGCATCGAAGCTGGCTGAACGCTTTTACCGGCCCGCTG
TCGTGCTGGGGATTGATGAGGAGCAGGGAATCGCCAAAGGGTCGGCGCGAAGCATCAGAGGCTTCAACCTTTTTACGAGC
CTGTCACAGTGCAGAGACATTCTTCCTCATTTCGGCGGGCACCCGATGGCCGCAGGAATGACTTTGAAGGCTGAAGATGT
GGCGGATTTAAGGGACCGGCTGAATCAAATGGCTGAAGAAACCCTTACCGAAGAGGATTTTATCCCCGTTCAGGAGGTTG
ATCTTGTCTGCGGCGTCGAAGACATCACCGTTGAAAGCATTACAGAATTGAATATGCTGTCGCCGTTCGGCATGCTTAAC
CCTAAACCTCATGTGATGGTGGAAAACGCCGTGCTTGATGAAGTGCGCCTGATCGGAGCAAATAAAAATCACGTGAAAAT
GACGGTGAAAAATGATTCCGCCGTTCTCGACTGCGTCGGCTTTAACAAAGGAGAGCTTGAAGCCGGGATTGTTCCCGGAT
CAACGATTTCCATTGTCGGCGAGATGTCTATTAATGAATGGAACAACAGAAAGAAACCCCAGCTGATGATTAAAGATGCT
GCGGTGCCGGAATGGCAGCTTTTTGATATCAGGGGCAAGCGGATGTGGGAAGATACGGTCACTGCGCTGCCTAAGGAAAA
ACGGGTGCTCATCAGCTTTAACGAAAAAACCGCCCAAAAGCTCCGTGCCGAGCTTTCGGGTGAGCTGGCTGAGATCACGT
CGGAATCCGAAGCAGAAGCTCTTCCGCTTGACGGAAAGTATGCCGTTTTTCTGGATGTGCCGCCGTCAGCGGACCGCCTC
CAGCGTTTGCTTGACGGGAAGAAGCCGGAACGGATTTATTTTGTTTTTATTAATCATGAAGAACATTTCCTGTCCTCATT
TCCATCGCGGAATGACTTCAAGTGGTTTTACGCATTTCTCTTGAAAAGGGGCACTTTTGACTTAGGCAGGCATGGTTCAG
AGCTTGCAAGACACAGAGGATGGTCAATTGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTTAAA
ATAGAAGATGGTGTGCTGTCTGTCGTGAGCGGCGCGAAAAAACGCGACCTCGCAGATTCGCAAACCTATCAGGTAAAACA
GCAGCTGATGGAATTAGACCAGAAGCTCAATTATTCCGCAGCCCATGAGCTGAAGGAATGGCTGAATAAGCTGATGAACC
AAGGTTCAGAGGCTTATGAAAGTACGAGGAGGACATAG

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-768)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

81.934

100

0.82