Detailed information NTG0737960

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: OD347_RS12925
• Genome accession: NZ_CP107079
• Coordinates: 2566100..2568478 (-)
• Length: 792 a.a.
• NCBI ID: WP_088613182.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain LT-2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2561100..2573478

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OD347_RS12890	-	2562181..2562909 (+)	729	WP_013353013.1	amino acid ABC transporter ATP-binding protein	-
OD347_RS12895	-	2562930..2563757 (+)	828	WP_088613179.1	transporter substrate-binding domain-containing protein	-
OD347_RS12900	-	2563815..2564465 (+)	651	WP_088613180.1	amino acid ABC transporter permease	-
OD347_RS12905	-	2564484..2565140 (+)	657	WP_088613181.1	amino acid ABC transporter permease	-
OD347_RS12910	-	2565174..2565305 (-)	132	WP_003152741.1	YrzQ family protein	-
OD347_RS12915	-	2565327..2565518 (-)	192	WP_003152738.1	hypothetical protein	-
OD347_RS12920	-	2565531..2565989 (-)	459	WP_014470766.1	hypothetical protein	-
OD347_RS12925	recD2	2566100..2568478 (-)	2379	WP_088613182.1	ATP-dependent RecD-like DNA helicase	Machinery gene
OD347_RS12930	-	2568497..2569117 (-)	621	WP_088613875.1	lipopolysaccharide assembly protein LapB	-
OD347_RS12935	mnmA	2569205..2570320 (-)	1116	WP_088613183.1	tRNA 2-thiouridine(34) synthase MnmA	-
OD347_RS12940	-	2570357..2571496 (-)	1140	WP_088613184.1	cysteine desulfurase family protein	-
OD347_RS12945	cymR	2571515..2571931 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
OD347_RS12950	-	2572126..2573394 (+)	1269	WP_088613185.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88328.08 Da
• Isoelectric Point: 5.0255

>NTDB_id=737960 OD347_RS12925 WP_088613182.1 2566100..2568478(-) (recD2) [Bacillus velezensis strain LT-2]
MDQLKIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILADASVLYDVPKMSRKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIDTKQLIINTQTLLNQSADGGRVTEMDAADGIIALGESKDIIIEGDRCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMKVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSAQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNILLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=737960 OD347_RS12925 WP_088613182.1 2566100..2568478(-) (recD2) [Bacillus velezensis strain LT-2]
GTGGATCAGCTGAAAATCGAGGAACAACCGTATGTAAAAGGCGTCATTCATACGGTCATTTACCACAATGACACCAACCT
GTATACAGTGCTGAAAGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACTTACACATTTTACGGAAAAACCGCCACACATCCCAAGTTCGGCCTGCAATTCCAGGCT
GAGCACTTTAAAAAAGAAATTCCGACCACAAAAGAAGGGATCATTCACTATTTATCAAGTGATCTGTTTGAAGGGATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTTGGAGACGGCGCGCTGAATAAAATTCTGGCTGATGCGTCGGTGCTTT
ACGATGTGCCGAAAATGTCCAGAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTGGAGCAGATT
ATGATTTCTCTTAACCAATACGGTTTCGGACCTCAGCTTTCCATGAAAATTTATCAGGCTTACGAAACGGAAACCCTTGA
GAAAATTCAGGAGAATCCTTATCAGCTTGTAAAGGATGTGGAAGGCATCGGCTTTGTAAAGGCCGACGAGCTGGGCGGAA
AGATGGGTCTGTCAGGGAACCACCCCGAGCGGATCAAAGCGGCGATCTTATATACGATTGAATCGACCTGCCTTTCAGAA
GGTCATACTTACATAGACACAAAGCAGCTGATTATCAATACGCAAACGCTTCTGAATCAGTCAGCTGACGGAGGCCGGGT
CACGGAAATGGATGCGGCTGACGGCATCATCGCCCTCGGAGAGAGTAAGGATATCATCATAGAAGGAGACCGCTGCTATT
TTCCATCTTTGTTTTACGCGGAACAAAATGTCGCAAAACGCGTGCTCGACATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCGCTCGGTGAACTGGAAGAACGGATGAAAGTTCAATACGCTCCGAGCCAAAAGGA
TGCTATTCAAAAAGCGCTGTCGTCGCCGATGCTTTTACTGACCGGAGGACCGGGTACAGGAAAAACAACCGTTATCAAAG
GAATCGTGGAATTATACAGTGAACTCCACGGCGTATCGCTTGATCCCGGTGATTATAAAAAAGACGAGGCGTTTCCGGTG
CTGCTTGCCGCACCGACCGGAAGAGCCGCAAAACGGATGAGCGAATCTACGGGTCTGCCTGCTGTTACGATTCACAGGCT
GCTCGGCTGGAATGGCGCTGAAGGCTTTACCTACAATGAAGATCAGCCGATTGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATTTGGCTCGCCAGCCATTTGTTTAAGGCGCTCCCTAAGCACATTCAGCTCATCGTCGTGGGTGAT
GAAGACCAGCTTCCTTCCGTGGGGCCGGGGCAGGTGCTGAGAGACCTTTTGGCTTCCGAGGTGCTGCCGACAGTGCGCCT
GACAGATATTTACCGTCAGGCGGAAGGGTCATCCATTGTCGAACTTGCCCATGATATGAAAAAAGGGCTGCTTCCAAAAG
GACTGACCGCGCCGACAAAAGACCGCTCATTTATCCGCTGTAATTCTGCACAGATTAAAGAAGTCGTCGATCAAGTCGTT
TCAAACGCGTTAAAGAAGGGATATACCTCCAGAGATATTCAAGTGCTTGCGCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAATATACTTCTTCAAGACATCATGAATCCGCCGAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGTCT
ACAGGACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGTGATATCGGCGAAATCGTG
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTCTCGTTTGACGGCAATGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACTCATGCTTACTGCTGTTCCATCCATAAGTCTCAGGGAAGTGAATTTCCGATTGTCG
TCCTGCCGGTCGTCAAAGGCTACTATCGGATGCTTAGGAGAAATCTCCTTTATACCGCCATTACAAGGGCCAAGAAATTT
CTGATTCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGATGCCACCGTCAGACAGACGTCGCTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCTCTGCAAAAAGAACTGCCGTTCAGTGTATATG
ATGCGAACATCGGAATGGAAGGCATTACGCCGTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

• AAA domain (AAA_30) (341-548)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	88.496	99.874	0.884