Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OD347_RS08750 Genome accession   NZ_CP107079
Coordinates   1709511..1710290 (+) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus velezensis strain LT-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1704511..1715290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS08730 trmFO 1705198..1706505 (+) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  OD347_RS08735 xerC 1706575..1707492 (+) 918 WP_013352249.1 tyrosine recombinase XerC -
  OD347_RS08740 hslV 1707508..1708053 (+) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  OD347_RS08745 hslU 1708070..1709473 (+) 1404 WP_014470401.1 HslU--HslV peptidase ATPase subunit -
  OD347_RS08750 codY 1709511..1710290 (+) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OD347_RS08755 flgB 1710645..1711034 (+) 390 WP_013352253.1 flagellar basal body rod protein FlgB -
  OD347_RS08760 flgC 1711034..1711486 (+) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  OD347_RS08765 fliE 1711497..1711817 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  OD347_RS08770 fliF 1711860..1713470 (+) 1611 WP_071346815.1 flagellar basal-body MS-ring/collar protein FliF -
  OD347_RS08775 fliG 1713483..1714499 (+) 1017 WP_013352256.1 flagellar motor switch protein FliG -
  OD347_RS08780 fliH 1714492..1715247 (+) 756 WP_071346814.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=737941 OD347_RS08750 WP_013352252.1 1709511..1710290(+) (codY) [Bacillus velezensis strain LT-2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=737941 OD347_RS08750 WP_013352252.1 1709511..1710290(+) (codY) [Bacillus velezensis strain LT-2]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTTCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGAACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAGTTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467