Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ODE14_RS10770 Genome accession   NZ_CP107053
Coordinates   2430183..2430836 (+) Length   217 a.a.
NCBI ID   WP_248391166.1    Uniprot ID   -
Organism   Chryseobacterium sp. PET-29     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2425183..2435836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODE14_RS10740 aqpZ 2425708..2426460 (+) 753 WP_263603834.1 aquaporin Z -
  ODE14_RS10745 - 2426517..2427062 (-) 546 WP_263601450.1 hypothetical protein -
  ODE14_RS10750 - 2427224..2428210 (-) 987 WP_263601451.1 acyl transferase -
  ODE14_RS10755 - 2428386..2429177 (-) 792 WP_248391170.1 UDP-2,3-diacylglucosamine diphosphatase -
  ODE14_RS10760 - 2429201..2429647 (-) 447 WP_066433447.1 6-pyruvoyl trahydropterin synthase family protein -
  ODE14_RS10765 - 2429696..2430079 (-) 384 WP_263601452.1 acyl-CoA thioesterase -
  ODE14_RS10770 comF 2430183..2430836 (+) 654 WP_248391166.1 ComF family protein Machinery gene
  ODE14_RS10775 - 2430918..2431343 (+) 426 WP_248391164.1 hypothetical protein -
  ODE14_RS10780 - 2431427..2432116 (+) 690 WP_263601453.1 alpha/beta fold hydrolase -
  ODE14_RS10785 upp 2432105..2432758 (-) 654 WP_263601454.1 uracil phosphoribosyltransferase -
  ODE14_RS10790 der 2432836..2434146 (-) 1311 WP_248391157.1 ribosome biogenesis GTPase Der -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24963.10 Da        Isoelectric Point: 8.4807

>NTDB_id=737752 ODE14_RS10770 WP_248391166.1 2430183..2430836(+) (comF) [Chryseobacterium sp. PET-29]
MILDILFPNRCLGCNCIISADLLVCELCFGRIDFIHSGYFDDNLIKERCRLLFPVENTFALMQFGKENLSRKIIHELKYK
SREKAGEILAEWTTTRLDFKDQKPDLMVSVPLHPKKLKERGYNQLHVFTEKLSAFYGIPFDHDVIKRNQYSKAQALKDKQ
NRLKSENVFSVTKSITQKNILLIDDVFTTGNTIASIAWEILKAGNNTVNVLVMAMDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=737752 ODE14_RS10770 WP_248391166.1 2430183..2430836(+) (comF) [Chryseobacterium sp. PET-29]
ATGATTTTAGATATTTTATTTCCTAACCGTTGTCTGGGCTGCAATTGTATTATATCGGCTGATCTTCTGGTTTGTGAGCT
GTGTTTCGGCCGTATTGACTTTATCCATTCCGGTTATTTTGATGATAATTTAATTAAAGAAAGATGCAGGCTTCTCTTTC
CTGTTGAAAATACCTTTGCTTTGATGCAGTTTGGTAAAGAAAATCTCAGCAGGAAAATCATCCATGAATTAAAATACAAA
AGCAGGGAAAAAGCAGGAGAAATATTGGCAGAATGGACCACTACCCGACTTGATTTTAAAGATCAAAAGCCGGATTTGAT
GGTTTCCGTTCCGCTGCATCCCAAAAAGTTGAAAGAACGAGGATACAACCAGCTTCATGTATTTACTGAAAAACTTTCTG
CATTTTACGGAATTCCATTTGATCATGATGTAATCAAAAGAAATCAGTACTCAAAAGCACAGGCCCTAAAAGATAAACAG
AACCGGTTAAAGTCGGAAAATGTATTTTCTGTTACAAAAAGCATAACTCAAAAAAATATACTTCTTATTGATGACGTATT
CACTACCGGAAATACAATTGCTTCTATTGCATGGGAAATTCTCAAAGCGGGTAATAATACGGTAAACGTACTGGTGATGG
CGATGGATGTGTAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

49.537

99.539

0.493