Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ODQ18_RS07030 Genome accession   NZ_CP107039
Coordinates   1360450..1361229 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain 11060     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1355450..1366229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS07000 (ODQ18_07000) fliH 1355468..1356220 (-) 753 WP_032725764.1 flagellar assembly protein FliH -
  ODQ18_RS07005 (ODQ18_07005) fliG 1356213..1357229 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ODQ18_RS07010 (ODQ18_07010) fliF 1357242..1358852 (-) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  ODQ18_RS07015 (ODQ18_07015) fliE 1358898..1359218 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ODQ18_RS07020 (ODQ18_07020) flgC 1359229..1359681 (-) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  ODQ18_RS07025 (ODQ18_07025) flgB 1359681..1360070 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  ODQ18_RS07030 (ODQ18_07030) codY 1360450..1361229 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ODQ18_RS07035 (ODQ18_07035) hslU 1361269..1362672 (-) 1404 WP_041850833.1 HslU--HslV peptidase ATPase subunit -
  ODQ18_RS07040 (ODQ18_07040) clpQ 1362689..1363234 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ODQ18_RS07045 (ODQ18_07045) xerC 1363247..1364161 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  ODQ18_RS07050 (ODQ18_07050) trmFO 1364229..1365536 (-) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=737633 ODQ18_RS07030 WP_003220850.1 1360450..1361229(-) (codY) [Bacillus subtilis strain 11060]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=737633 ODQ18_RS07030 WP_003220850.1 1360450..1361229(-) (codY) [Bacillus subtilis strain 11060]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467