Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OD459_RS20015 Genome accession   NZ_CP107027
Coordinates   3942234..3944660 (+) Length   808 a.a.
NCBI ID   WP_263599448.1    Uniprot ID   A0AA46P1C3
Organism   Cytobacillus firmus strain M7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3937234..3949660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD459_RS19990 (OD459_19990) - 3937935..3938621 (+) 687 WP_263599443.1 YczE/YyaS/YitT family protein -
  OD459_RS19995 (OD459_19995) cymR 3938621..3939040 (+) 420 WP_009333072.1 cysteine metabolism transcriptional regulator CymR -
  OD459_RS20000 (OD459_20000) - 3939108..3940250 (+) 1143 WP_263599445.1 cysteine desulfurase family protein -
  OD459_RS20005 (OD459_20005) mnmA 3940310..3941425 (+) 1116 WP_263599446.1 tRNA 2-thiouridine(34) synthase MnmA -
  OD459_RS20010 (OD459_20010) - 3941542..3942207 (+) 666 WP_197248236.1 tetratricopeptide repeat protein -
  OD459_RS20015 (OD459_20015) recD2 3942234..3944660 (+) 2427 WP_263599448.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OD459_RS20020 (OD459_20020) - 3944759..3944908 (+) 150 WP_263599449.1 hypothetical protein -
  OD459_RS20025 (OD459_20025) - 3945029..3945499 (+) 471 WP_163143571.1 PRC-barrel domain-containing protein -
  OD459_RS20030 (OD459_20030) - 3945515..3945706 (+) 192 WP_048010338.1 hypothetical protein -
  OD459_RS20035 (OD459_20035) - 3945732..3945866 (+) 135 WP_081757307.1 YrzQ family protein -
  OD459_RS20040 (OD459_20040) - 3945990..3947078 (+) 1089 WP_163143568.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 91246.38 Da        Isoelectric Point: 5.0169

>NTDB_id=737466 OD459_RS20015 WP_263599448.1 3942234..3944660(+) (recD2) [Cytobacillus firmus strain M7]
MEKQDSMDLFAEQGKFIKGRHLVTIFHNEQNLYTVVRIRVDETNDSYDEKEAVITGYLPKMHEHETYIFYGEFKDHPKFG
IQFHASHYRKDLPQTKQGVANYLSSELFKGIGKKTAEQIVETLGEGAITRILNQPSLLDNVPKLSPEKAKLLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIYQVYKEMTIEVVQNNPYKLVEDIEGVGFGRADELGYQIGISGNHPDRIKAACLYILET
ESMQAGHVYIEAKPLLQSVKKLLEENKRDLIEYKDISKELIKLEEEGKIMAEGQKIFLPSLYFSEKGLVTNIKRILKQNQ
YDEQFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLELKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFERHEESPLEGRILIVDETSMVDVWLANQLFKALPENMQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEMKKGKLPANISAQQSDRSFIKCQPGQIADVV
EKVVLNAKKKGYSSKDIQVLAPMYRGPAGIDRLNEILQEILNPNPDGSRKELSFGDVKYRIGDKVLQLVNQPENNVFNGD
MGEIVSIFYAKENTEKQDMIVVSFDGAEATYTRQDLNQITHAYCCSVHKSQGSEFPIVIMPVVKSYYRMLRRNLLYTAIT
RSRQFLILCGEEDALKLGVERADEQARLTTLSEKLRDAILFNDETGLEDTAESSLTETLSLEEKLLQADPMIGMGNITPY
DFLEKEYS

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=737466 OD459_RS20015 WP_263599448.1 3942234..3944660(+) (recD2) [Cytobacillus firmus strain M7]
ATGGAAAAACAGGATTCCATGGATCTTTTTGCCGAACAGGGGAAGTTCATAAAGGGCAGACATCTGGTCACAATCTTTCA
TAATGAGCAAAACTTATATACGGTTGTGCGCATTAGGGTTGATGAAACGAATGACTCTTATGATGAGAAAGAAGCGGTCA
TTACCGGCTATCTTCCAAAGATGCATGAGCATGAAACCTATATTTTTTATGGTGAATTCAAAGACCACCCTAAGTTCGGC
ATCCAATTCCATGCAAGCCATTACAGGAAAGATCTTCCCCAGACGAAACAAGGCGTAGCCAATTATTTATCAAGTGAATT
ATTTAAAGGGATTGGCAAGAAAACAGCCGAGCAAATCGTGGAGACACTTGGAGAAGGTGCGATTACTCGTATTCTAAACC
AGCCGTCCCTCCTCGATAATGTTCCCAAGCTGTCACCTGAAAAAGCTAAATTGCTTTACGACACGCTAATGGAACACCAG
GGCCTTGAGCAAGCCATGATCGCTCTTAATCAATATGGGTTTGGCCCGCAGCTTTCCATGAGAATTTATCAGGTGTATAA
AGAGATGACGATTGAAGTCGTTCAAAATAACCCTTATAAGCTGGTTGAGGATATAGAGGGGGTCGGCTTTGGCCGTGCTG
ACGAGCTGGGATATCAAATTGGCATATCAGGCAATCATCCTGACCGTATTAAAGCTGCCTGCCTCTACATACTGGAAACG
GAGAGTATGCAGGCAGGCCATGTTTATATTGAAGCAAAGCCTCTTCTGCAAAGTGTAAAGAAGCTGCTCGAAGAAAATAA
ACGTGATTTGATTGAATACAAGGATATATCCAAAGAACTGATTAAGCTTGAAGAGGAAGGGAAGATCATGGCTGAAGGCC
AGAAAATTTTCCTTCCATCTCTTTATTTTTCCGAAAAAGGACTAGTAACCAATATTAAGCGGATCCTCAAGCAAAACCAG
TATGATGAACAGTTTCCGGAGTCGGAATTTCTTTTGGCCCTTGGAAATTTGGAGGAGCGCCTGGGTGTCCAATATGCCCC
AACTCAAAAGGAAGCCATTCAAACAGCTCTTATGTCTCCTATGCTGATATTGACCGGCGGGCCGGGGACAGGAAAAACAA
CTGTTATTAAGGGGATTGTTGAGTTATATGCCGAGCTGCATGGCTGCTCCCTGGAACTGAAAGATTATAAAAAGGAAGAG
CCCTTTCCCTTCCTGCTGGCAGCCCCTACAGGAAGGGCTGCAAAACGGATGGCAGAATCAACAGGGCTGCCGGCTGTAAC
GATTCACCGTCTTCTTGGATGGAATGGGTCTGAAGGATTTGAGCGGCATGAGGAGAGTCCGCTGGAAGGCAGGATTTTAA
TTGTAGATGAAACATCAATGGTTGATGTTTGGCTTGCAAATCAGCTTTTCAAGGCTCTTCCTGAAAATATGCAAGTAATA
CTGGTTGGTGATGAAGACCAGCTGCCTTCAGTGGGTCCCGGCCAGGTTTTGAAGGATCTTCTGCGCTCAGAACGCATTCC
AACTGTCCGTTTAACAGATATATACAGGCAGGCTGAAGGGTCTTCAATTATTGAACTGGCACATGAAATGAAAAAAGGCA
AGCTTCCTGCGAACATCAGTGCGCAGCAATCAGACCGTTCATTTATCAAATGCCAGCCGGGCCAAATTGCTGATGTTGTT
GAAAAGGTTGTCCTTAATGCCAAAAAGAAAGGTTATTCATCTAAAGATATTCAGGTGCTTGCCCCAATGTACCGCGGACC
TGCAGGCATCGACAGACTAAACGAAATACTGCAGGAAATACTGAATCCAAATCCCGATGGATCGAGGAAAGAGCTGTCCT
TTGGTGATGTGAAATACAGAATTGGCGATAAGGTCCTTCAACTTGTCAACCAGCCTGAGAACAATGTCTTTAACGGGGAT
ATGGGGGAAATTGTCTCTATTTTTTACGCAAAGGAAAATACGGAAAAACAGGATATGATTGTCGTATCCTTTGATGGTGC
GGAAGCTACATACACAAGGCAGGATTTGAACCAGATCACTCATGCCTACTGCTGCTCTGTCCATAAATCGCAGGGAAGTG
AATTTCCGATTGTCATTATGCCTGTTGTTAAAAGCTATTACAGGATGCTGAGAAGAAATCTCCTTTATACCGCCATTACC
CGCAGCAGACAATTCTTGATATTGTGCGGCGAAGAAGATGCATTAAAATTGGGTGTGGAACGTGCGGATGAACAGGCCCG
CTTGACCACTCTTTCTGAAAAGCTGAGAGATGCAATCCTGTTTAATGATGAAACAGGGCTTGAAGATACAGCTGAGTCTT
CTCTTACGGAAACACTTTCTCTCGAAGAAAAGCTTCTCCAAGCCGATCCAATGATAGGAATGGGAAATATAACACCGTAT
GATTTTTTGGAAAAAGAATATAGCTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

AAA domain (AAA_30)

(345-552)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.481

98.639

0.606