Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   OD459_RS19920 Genome accession   NZ_CP107027
Coordinates   3920602..3922971 (+) Length   789 a.a.
NCBI ID   WP_258751050.1    Uniprot ID   A0AA46SDG9
Organism   Cytobacillus firmus strain M7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3915602..3927971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD459_RS19900 (OD459_19900) - 3916213..3916509 (+) 297 WP_263599437.1 post-transcriptional regulator -
  OD459_RS19905 (OD459_19905) secDF 3916798..3919062 (+) 2265 WP_197213322.1 protein translocase subunit SecDF -
  OD459_RS19910 (OD459_19910) - 3919198..3920100 (+) 903 WP_048010357.1 cation diffusion facilitator family transporter -
  OD459_RS19915 (OD459_19915) - 3920125..3920442 (+) 318 WP_258751051.1 lipopolysaccharide assembly LapA domain-containing protein -
  OD459_RS19920 (OD459_19920) recJ 3920602..3922971 (+) 2370 WP_258751050.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  OD459_RS19925 (OD459_19925) - 3922962..3923474 (+) 513 WP_048010354.1 adenine phosphoribosyltransferase -
  OD459_RS19930 (OD459_19930) - 3923963..3926158 (+) 2196 WP_061791146.1 RelA/SpoT family protein -
  OD459_RS19935 (OD459_19935) dtd 3926173..3926613 (+) 441 WP_048010352.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88074.44 Da        Isoelectric Point: 4.9733

>NTDB_id=737465 OD459_RS19920 WP_258751050.1 3920602..3922971(+) (recJ) [Cytobacillus firmus strain M7]
MLHSRTRWIVRQTEEDKVQRLSKELNISPLAASLLINRGMDTVDSARYFLMDNEQEFHDPFLMTDMAIAVSRIKEAIEKQ
EPILIFGDYDADGVTSTSVMMMALKDLGADVQFYIPNRFTEGYGPNIPAFEHAAEIGIRLIITVDTGISAVNEAKAAKEL
GMDLIITDHHEPGPELPEALAIVHPKHPESRYPFRELAGVGVAFKLAHALYGEMPEHLLEIAAIGTIADLVSLTGENRLI
AKRGIQKLKSTKNTGLNALFKAARIELPSISEETIGFTIGPRLNAAGRLESADPAVDLLLTNDPYEAQAIAEEIEMLNKE
RQSIVNDIAAQAVHEVETNFPISENSVIVVGKEGWNAGVIGIVASKLVEKFYRPAIVLSYDSEKGLAKGSARSIEGFDLF
KNLSECRDILPHFGGHPMAAGMTLSIDSVDDLRSILNTLANEQLSEEDFIPVTSIDGVFHLKDINLSSIAEMQLLAPFGM
GNAKPKVMIKDANIAAMRKIGSEQNHIKVTIENDGSSLDGIGFGLGHLHEHISPYSKLSVIGELSINEWNNIKKPQIFLQ
DMAVNSWQLFDIRSLKRLERLQSVIPEANTTWLFFNEEYISKYKPFAGENMVKITSAEDAEDIKIEGSNVVLADLPPSKE
ILAQVFSGKKPARIYAHFYKEDSDFFSTLPTRDHFKWYFALIAKKGSIDIRRHGNDIAKHKGWSRETVDFMSQVFFELEF
VKINNGVISLNNTSTKRDLADSQTYQLKQAQYTLESDLLYSSFQQLKDWFDEVMQGAVKLEEAKEEKWT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=737465 OD459_RS19920 WP_258751050.1 3920602..3922971(+) (recJ) [Cytobacillus firmus strain M7]
ATGTTACATTCAAGAACGCGATGGATTGTTCGGCAAACAGAGGAGGATAAAGTACAGCGGCTTTCAAAGGAACTGAATAT
TTCTCCTCTTGCAGCATCGCTTTTAATTAATCGCGGAATGGATACCGTTGATTCAGCACGGTATTTTCTGATGGATAATG
AGCAGGAATTTCATGATCCTTTTTTAATGACAGATATGGCAATTGCTGTTTCCAGAATAAAAGAAGCTATTGAAAAACAG
GAACCTATTTTAATTTTTGGTGATTATGATGCGGATGGTGTGACCAGCACTTCTGTCATGATGATGGCACTTAAAGATCT
CGGTGCTGATGTCCAATTCTACATACCGAATCGTTTTACGGAGGGCTATGGGCCAAATATCCCGGCTTTTGAACATGCAG
CCGAAATTGGCATCCGTTTAATTATTACTGTAGATACTGGAATCTCTGCTGTAAATGAAGCAAAAGCTGCAAAAGAGCTT
GGAATGGATTTGATCATTACAGATCACCATGAGCCAGGCCCCGAGCTTCCTGAAGCATTGGCCATTGTGCATCCTAAGCA
TCCGGAGAGCAGATACCCGTTCCGGGAACTTGCCGGTGTTGGGGTAGCATTTAAGCTTGCACATGCGCTTTATGGTGAAA
TGCCTGAACACCTTTTGGAGATAGCTGCGATCGGCACAATTGCTGATCTTGTTTCTTTAACAGGAGAAAACAGACTTATT
GCCAAGCGCGGGATTCAAAAGCTGAAATCAACTAAAAATACAGGTTTGAATGCTTTGTTTAAAGCGGCACGAATCGAGCT
TCCATCCATTAGTGAGGAAACGATCGGCTTTACAATCGGCCCTCGCCTCAATGCAGCAGGAAGGCTTGAAAGCGCGGATC
CTGCTGTGGATCTGCTTTTGACAAATGATCCTTATGAAGCACAAGCCATTGCCGAAGAAATTGAAATGCTGAATAAAGAA
AGGCAATCTATTGTCAATGACATTGCAGCGCAAGCGGTTCATGAGGTTGAAACAAATTTCCCAATCAGTGAGAATTCAGT
TATTGTTGTCGGGAAAGAAGGCTGGAACGCCGGGGTAATCGGAATAGTAGCTTCGAAGCTTGTCGAAAAGTTTTACCGCC
CGGCCATTGTCCTTAGTTATGACAGTGAAAAAGGGCTGGCGAAGGGTTCAGCAAGAAGTATAGAAGGTTTTGATCTGTTC
AAGAATCTTTCTGAATGCCGGGATATCCTGCCTCACTTTGGAGGTCACCCGATGGCAGCGGGTATGACTTTATCCATTGA
TTCGGTTGATGATCTGAGAAGCATACTGAATACTCTTGCAAATGAACAGCTGAGTGAGGAAGATTTTATTCCTGTAACCT
CTATTGATGGGGTTTTCCATTTAAAAGATATTAATCTTTCTTCCATTGCGGAAATGCAGCTGCTTGCTCCATTCGGGATG
GGAAATGCGAAACCAAAAGTAATGATAAAAGATGCTAATATTGCAGCTATGAGAAAGATCGGATCTGAACAGAACCATAT
TAAAGTCACAATCGAGAATGATGGATCTTCACTTGATGGCATTGGTTTTGGACTTGGGCATTTGCATGAACATATTTCAC
CATACTCCAAGCTGTCCGTTATTGGTGAATTATCCATTAATGAATGGAATAATATTAAAAAACCGCAAATTTTCCTGCAG
GATATGGCAGTCAACTCCTGGCAGCTCTTTGATATCCGGAGTTTAAAACGGCTTGAAAGGCTCCAAAGTGTCATTCCTGA
GGCAAACACAACCTGGTTATTTTTTAATGAGGAATATATTTCTAAATATAAACCATTTGCAGGGGAAAACATGGTGAAAA
TAACATCTGCAGAAGACGCAGAAGACATAAAAATAGAAGGCTCAAATGTTGTACTGGCTGATTTGCCGCCTTCAAAGGAA
ATTCTTGCACAGGTTTTCTCCGGGAAAAAACCTGCCAGAATTTATGCTCATTTCTATAAAGAAGACAGTGACTTTTTTAG
CACATTACCAACAAGAGACCATTTTAAATGGTACTTTGCCCTGATTGCTAAAAAAGGTTCAATTGATATCAGGCGTCATG
GGAATGATATAGCGAAGCATAAAGGATGGAGCAGAGAGACAGTAGATTTTATGTCTCAAGTGTTTTTTGAATTGGAATTT
GTTAAAATAAATAATGGTGTCATTTCGTTAAACAATACATCCACTAAACGTGATTTAGCTGATTCACAAACTTATCAGCT
TAAACAGGCACAATACACTCTTGAGAGCGATTTGCTCTATTCATCCTTTCAGCAGCTCAAAGACTGGTTTGATGAAGTTA
TGCAAGGGGCTGTAAAACTTGAGGAGGCAAAGGAAGAAAAATGGACTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(314-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.026

98.352

0.541