Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OC371_RS01620 Genome accession   NZ_CP106988
Coordinates   343754..344314 (+) Length   186 a.a.
NCBI ID   WP_086221688.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain NY13623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338754..349314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC371_RS01595 (OC371_01595) - 340895..341025 (-) 131 Protein_305 hypothetical protein -
  OC371_RS01600 (OC371_01600) rpoZ 341064..341342 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OC371_RS01605 (OC371_01605) gmk 341415..342044 (-) 630 WP_000015937.1 guanylate kinase -
  OC371_RS01610 (OC371_01610) ispH 342167..343117 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OC371_RS01615 (OC371_01615) fimU 343287..343760 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OC371_RS01620 (OC371_01620) pilV 343754..344314 (+) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  OC371_RS01625 (OC371_01625) pilW 344315..345316 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  OC371_RS01630 (OC371_01630) pilX 345313..346131 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20190.18 Da        Isoelectric Point: 8.4746

>NTDB_id=736945 OC371_RS01620 WP_086221688.1 343754..344314(+) (pilV) [Acinetobacter baumannii strain NY13623]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRRCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=736945 OC371_RS01620 WP_086221688.1 343754..344314(+) (pilV) [Acinetobacter baumannii strain NY13623]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCGGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

99.462

100

0.995
  pilV Acinetobacter baylyi ADP1

40.86

100

0.409