Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OAT02_RS10605 Genome accession   NZ_CP106947
Coordinates   1982803..1983582 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain 4F5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1977803..1988582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OAT02_RS10585 (OAT02_10585) trmFO 1978457..1979761 (+) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  OAT02_RS10590 (OAT02_10590) xerC 1979827..1980726 (+) 900 WP_001101241.1 tyrosine recombinase XerC -
  OAT02_RS10595 (OAT02_10595) hslV 1980769..1981311 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  OAT02_RS10600 (OAT02_10600) hslU 1981334..1982725 (+) 1392 WP_000550087.1 ATP-dependent protease ATPase subunit HslU -
  OAT02_RS10605 (OAT02_10605) codY 1982803..1983582 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OAT02_RS10610 (OAT02_10610) rpsB 1983931..1984632 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  OAT02_RS10615 (OAT02_10615) tsf 1984736..1985623 (+) 888 WP_001018578.1 translation elongation factor Ts -
  OAT02_RS10620 (OAT02_10620) pyrH 1985690..1986412 (+) 723 WP_000042668.1 UMP kinase -
  OAT02_RS10625 (OAT02_10625) frr 1986415..1986972 (+) 558 WP_000531501.1 ribosome recycling factor -
  OAT02_RS10630 (OAT02_10630) uppS 1987058..1987834 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=736760 OAT02_RS10605 WP_000421290.1 1982803..1983582(+) (codY) [Bacillus thuringiensis strain 4F5]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=736760 OAT02_RS10605 WP_000421290.1 1982803..1983582(+) (codY) [Bacillus thuringiensis strain 4F5]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGTGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459