Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OEG88_RS02370 Genome accession   NZ_CP106926
Coordinates   542177..544033 (+) Length   618 a.a.
NCBI ID   WP_111946066.1    Uniprot ID   -
Organism   Clostridium perfringens strain MFDS1012647     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 537177..549033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG88_RS02355 (OEG88_02355) - 538198..538992 (+) 795 WP_138290006.1 HAD family hydrolase -
  OEG88_RS02360 (OEG88_02360) - 539126..539572 (-) 447 WP_263343358.1 MarR family winged helix-turn-helix transcriptional regulator -
  OEG88_RS02365 (OEG88_02365) - 539887..542184 (+) 2298 WP_111936450.1 ABC transporter ATP-binding protein -
  OEG88_RS02370 (OEG88_02370) rcrQ 542177..544033 (+) 1857 WP_111946066.1 ABC transporter ATP-binding protein Regulator
  OEG88_RS02375 (OEG88_02375) - 544548..545429 (+) 882 WP_263343361.1 hypothetical protein -
  OEG88_RS02380 (OEG88_02380) - 545683..546732 (+) 1050 WP_003449992.1 AEC family transporter -
  OEG88_RS02385 (OEG88_02385) - 547061..548059 (+) 999 WP_263343364.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68491.18 Da        Isoelectric Point: 5.9525

>NTDB_id=736696 OEG88_RS02370 WP_111946066.1 542177..544033(+) (rcrQ) [Clostridium perfringens strain MFDS1012647]
MSKERKGGMGGPMGRMGGGPRAVEKAKDFKGTMKKLGVYLKPYSLSIAIVILFAIGSAAFSIVGPKILGKATTKIFEGLV
QKITGVPDASIDFGYIGNIAMILVALYLVSSLFGIIQSFIMSGVAQKVSYNLRKQISEKMDTLPLNYFDTRTNGEVLSRI
TNDVDTVNQTLNQSLSQIITSVVTLIGVLIMMFSISWIMTLATFIILPVSMVLISLVVKKSQKYFKSQQEYLGHLNGQVE
EVYGGHNIMKAFNREEASTKDFDELNNTLYKSAWKSQFLSGMMMPIMSFVGNLGYVLVSILGGWLTIKSVITVGDIQAFI
QYVRSFNQPIAQMAQVANIMQSTAAAAERVFEFLDEEDEVKDPVNSVDPSEIRGEVEFEDVHFGYNEDKIIINDFSVDVK
PGQKVAIVGPTGAGKTTIVKLLMRFYDINSGSIKIDGHDIRDFKRADLRNLFGMVLQDTWLFNGTIMENLRYGRLDATDA
EVKEAAKAAHVDHFVKTLPDGYNMVLNEEASNISQGQKQLLTIARAFLKDPKLLILDEATSSVDTRTELLIQKAMEKLME
GRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLEKGGFYSSLYNSQFEQNSAS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=736696 OEG88_RS02370 WP_111946066.1 542177..544033(+) (rcrQ) [Clostridium perfringens strain MFDS1012647]
ATGAGTAAAGAAAGAAAAGGCGGAATGGGTGGCCCAATGGGTAGAATGGGCGGAGGCCCAAGAGCCGTTGAAAAAGCAAA
AGATTTTAAAGGAACAATGAAAAAGCTTGGGGTTTATTTAAAACCCTATAGTTTATCTATAGCTATTGTAATATTATTTG
CTATAGGAAGTGCTGCCTTCTCAATTGTAGGACCTAAGATTTTAGGTAAAGCTACTACAAAAATATTTGAAGGTTTAGTT
CAAAAGATAACAGGGGTACCAGATGCTTCTATAGATTTTGGATACATTGGAAATATAGCAATGATTTTAGTAGCTCTATA
CTTAGTAAGTTCATTATTTGGGATTATACAATCTTTTATAATGTCAGGAGTTGCTCAAAAGGTTTCTTATAACTTAAGAA
AGCAAATATCAGAAAAAATGGATACTTTACCTCTTAATTATTTTGATACAAGAACAAATGGAGAGGTTTTATCAAGAATT
ACAAATGACGTTGATACAGTGAACCAAACTTTAAATCAAAGTTTATCACAGATAATAACTTCAGTGGTTACTTTAATTGG
TGTATTAATAATGATGTTCTCAATAAGTTGGATTATGACTTTAGCAACATTTATAATACTTCCAGTTTCAATGGTTCTTA
TATCTTTAGTTGTTAAGAAATCTCAAAAATACTTTAAATCTCAACAAGAATACTTAGGTCATCTTAATGGTCAAGTAGAA
GAGGTTTATGGTGGACACAATATAATGAAAGCTTTCAATAGAGAAGAAGCTTCAACTAAAGACTTTGATGAATTAAATAA
CACTTTATATAAATCAGCTTGGAAATCTCAATTCTTATCAGGTATGATGATGCCAATTATGTCTTTTGTAGGAAACTTAG
GATATGTTTTAGTTTCAATACTTGGTGGATGGTTAACAATTAAAAGTGTTATAACAGTTGGGGATATACAAGCATTTATC
CAATATGTACGTTCATTTAACCAACCAATAGCTCAAATGGCTCAGGTTGCAAATATAATGCAATCAACAGCGGCGGCTGC
TGAGAGAGTATTTGAATTCTTAGATGAAGAGGATGAGGTTAAAGATCCAGTTAATTCAGTAGATCCTTCAGAAATAAGAG
GAGAAGTTGAATTTGAAGATGTTCACTTTGGATATAATGAAGATAAGATAATAATAAATGATTTCTCAGTAGATGTTAAA
CCAGGGCAAAAGGTGGCTATTGTTGGACCTACAGGAGCAGGTAAAACTACAATAGTTAAATTATTAATGAGATTCTACGA
TATAAATAGTGGAAGTATTAAGATTGATGGCCATGATATAAGAGACTTTAAGCGTGCTGATTTACGTAACTTATTTGGTA
TGGTTCTTCAAGATACATGGTTATTTAACGGAACCATAATGGAGAATTTACGTTATGGAAGACTAGATGCAACAGATGCT
GAGGTTAAAGAAGCTGCCAAGGCTGCCCATGTTGATCATTTCGTAAAAACTTTACCAGATGGATATAATATGGTTTTAAA
CGAAGAAGCAAGTAATATATCACAAGGACAAAAGCAGCTTTTAACAATTGCTAGAGCTTTCTTAAAAGACCCTAAGCTAT
TAATACTTGATGAGGCTACAAGTTCAGTTGATACTCGTACAGAGCTTTTAATCCAAAAAGCTATGGAAAAACTTATGGAA
GGAAGAACAAGCTTTATTATAGCTCACAGACTTTCTACTATACGTGATGCAGACTTAATCCTTGTTATGAAGGATGGAGA
TATAGTTGAACAAGGAAATCATGAAGAGCTTCTAGAAAAAGGTGGATTCTATTCAAGCCTTTACAATAGCCAATTTGAAC
AAAATAGTGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-541)

ABC transporter transmembrane region (ABC_membrane)

(48-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.934

95.307

0.485