Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   P8R49_RS05820 Genome accession   NZ_CP121266
Coordinates   1116951..1117529 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   P40396
Organism   Bacillus subtilis strain 107105     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111951..1122529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R49_RS05800 (P8R49_05800) hemAT 1112471..1113769 (-) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -
  P8R49_RS05805 (P8R49_05805) comW 1113908..1115436 (-) 1529 Protein_1076 FAD-dependent oxidoreductase -
  P8R49_RS05810 (P8R49_05810) yhxC 1115540..1116397 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  P8R49_RS05815 (P8R49_05815) yhzC 1116425..1116658 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  P8R49_RS05820 (P8R49_05820) comK 1116951..1117529 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  P8R49_RS05825 (P8R49_05825) yhxD 1117574..1118473 (-) 900 WP_014479372.1 SDR family oxidoreductase -
  P8R49_RS05830 (P8R49_05830) yhjA 1118690..1118959 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  P8R49_RS05835 (P8R49_05835) yhjB 1119003..1120472 (-) 1470 WP_014479374.1 sodium:solute symporter -
  P8R49_RS05840 (P8R49_05840) yhjC 1120469..1120669 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  P8R49_RS05845 (P8R49_05845) - 1120868..1121239 (-) 372 WP_014476361.1 hypothetical protein -
  P8R49_RS05850 (P8R49_05850) yhjE 1121391..1122014 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  P8R49_RS05855 (P8R49_05855) lepB 1122016..1122522 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=736696 P8R49_RS05820 WP_003245329.1 1116951..1117529(+) (comK) [Bacillus subtilis strain 107105]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=736696 P8R49_RS05820 WP_003245329.1 1116951..1117529(+) (comK) [Bacillus subtilis strain 107105]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P40396

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1