Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | NDL74_RS02340 | Genome accession | NZ_CP106921 |
| Coordinates | 452749..453708 (+) | Length | 319 a.a. |
| NCBI ID | WP_229940798.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain 10272 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 444609..493599 | 452749..453708 | within | 0 |
Gene organization within MGE regions
Location: 444609..493599
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NDL74_RS02295 (NDL74_02295) | - | 444609..445685 (-) | 1077 | WP_003692814.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| NDL74_RS02300 (NDL74_02300) | cysW | 445682..446542 (-) | 861 | WP_003699617.1 | sulfate ABC transporter permease subunit CysW | - |
| NDL74_RS02305 (NDL74_02305) | cysT | 446731..447558 (-) | 828 | WP_003699619.1 | sulfate ABC transporter permease subunit CysT | - |
| NDL74_RS02310 (NDL74_02310) | - | 447739..448071 (+) | 333 | WP_003687908.1 | hypothetical protein | - |
| NDL74_RS02315 (NDL74_02315) | - | 448398..448907 (+) | 510 | WP_003687909.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| NDL74_RS02320 (NDL74_02320) | - | 449139..449720 (-) | 582 | WP_003690895.1 | superoxide dismutase | - |
| NDL74_RS02325 (NDL74_02325) | dnaB | 449884..451290 (+) | 1407 | WP_003699622.1 | replicative DNA helicase | - |
| NDL74_RS02330 (NDL74_02330) | pilH | 451444..452109 (+) | 666 | WP_229940797.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| NDL74_RS02335 (NDL74_02335) | pilV | 452141..452752 (+) | 612 | WP_003699626.1 | type IV pilus modification protein PilV | Machinery gene |
| NDL74_RS02340 (NDL74_02340) | pilJ | 452749..453708 (+) | 960 | WP_229940798.1 | PilW family protein | Machinery gene |
| NDL74_RS02345 (NDL74_02345) | pilK | 453687..454298 (+) | 612 | WP_033911077.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| NDL74_RS02350 (NDL74_02350) | pilL | 454300..454773 (+) | 474 | WP_229940840.1 | PilX family type IV pilin | Machinery gene |
| NDL74_RS02355 (NDL74_02355) | - | 454843..455151 (-) | 309 | WP_025456177.1 | AzlD family protein | - |
| NDL74_RS02360 (NDL74_02360) | - | 455148..455858 (-) | 711 | Protein_464 | AzlC family ABC transporter permease | - |
| NDL74_RS02365 (NDL74_02365) | dut | 456024..456476 (+) | 453 | WP_003699637.1 | dUTP diphosphatase | - |
| NDL74_RS02370 (NDL74_02370) | dapC | 456552..457739 (+) | 1188 | WP_229931672.1 | succinyldiaminopimelate transaminase | - |
| NDL74_RS02375 (NDL74_02375) | yaaA | 457895..458674 (+) | 780 | WP_003699641.1 | peroxide stress protein YaaA | - |
| NDL74_RS02390 (NDL74_02390) | - | 459204..460397 (+) | 1194 | WP_017146746.1 | phage integrase central domain-containing protein | - |
| NDL74_RS02395 (NDL74_02395) | - | 460753..461022 (-) | 270 | WP_003687928.1 | hypothetical protein | - |
| NDL74_RS02400 (NDL74_02400) | - | 461217..461900 (-) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| NDL74_RS11795 | - | 462181..462447 (-) | 267 | Protein_471 | hypothetical protein | - |
| NDL74_RS02410 (NDL74_02410) | - | 462558..462773 (-) | 216 | WP_003691538.1 | hypothetical protein | - |
| NDL74_RS02415 (NDL74_02415) | - | 462825..463316 (-) | 492 | WP_033911206.1 | siphovirus Gp157 family protein | - |
| NDL74_RS02420 (NDL74_02420) | - | 463313..463495 (-) | 183 | WP_003691535.1 | hypothetical protein | - |
| NDL74_RS02425 (NDL74_02425) | - | 463635..464321 (-) | 687 | WP_010357532.1 | phage replication initiation protein, NGO0469 family | - |
| NDL74_RS02430 (NDL74_02430) | - | 464390..464551 (-) | 162 | WP_003691530.1 | hypothetical protein | - |
| NDL74_RS02435 (NDL74_02435) | - | 464548..464823 (-) | 276 | WP_151266294.1 | NGO1622 family putative holin | - |
| NDL74_RS02440 (NDL74_02440) | - | 464977..465309 (-) | 333 | WP_229940799.1 | hypothetical protein | - |
| NDL74_RS02445 (NDL74_02445) | - | 465450..465737 (-) | 288 | WP_260245393.1 | hypothetical protein | - |
| NDL74_RS02450 (NDL74_02450) | - | 465734..466210 (-) | 477 | WP_002255718.1 | DUF6948 domain-containing protein | - |
| NDL74_RS02455 (NDL74_02455) | - | 466243..466443 (-) | 201 | WP_048654497.1 | hypothetical protein | - |
| NDL74_RS02460 (NDL74_02460) | - | 466641..467054 (-) | 414 | WP_003687963.1 | hypothetical protein | - |
| NDL74_RS02465 (NDL74_02465) | - | 467051..467512 (-) | 462 | WP_003687965.1 | helix-turn-helix domain-containing protein | - |
| NDL74_RS02470 (NDL74_02470) | - | 467529..467966 (-) | 438 | WP_003687967.1 | hypothetical protein | - |
| NDL74_RS02475 (NDL74_02475) | - | 468079..468795 (-) | 717 | WP_003687969.1 | LexA family transcriptional regulator | - |
| NDL74_RS02480 (NDL74_02480) | - | 468870..469100 (+) | 231 | WP_020997318.1 | Cro/CI family transcriptional regulator | - |
| NDL74_RS02485 (NDL74_02485) | - | 469180..469335 (+) | 156 | WP_003698902.1 | hypothetical protein | - |
| NDL74_RS02490 (NDL74_02490) | - | 469312..469500 (-) | 189 | WP_003691445.1 | hypothetical protein | - |
| NDL74_RS02495 (NDL74_02495) | - | 469673..469900 (+) | 228 | WP_003698261.1 | helix-turn-helix domain-containing protein | - |
| NDL74_RS02500 (NDL74_02500) | - | 470018..470485 (+) | 468 | WP_229692802.1 | hypothetical protein | - |
| NDL74_RS02505 (NDL74_02505) | - | 470580..471083 (+) | 504 | WP_010360005.1 | hypothetical protein | - |
| NDL74_RS02510 (NDL74_02510) | - | 471080..472441 (+) | 1362 | WP_003689132.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| NDL74_RS02515 (NDL74_02515) | - | 472458..472709 (+) | 252 | WP_003703849.1 | hypothetical protein | - |
| NDL74_RS02520 (NDL74_02520) | - | 472723..473217 (+) | 495 | WP_047923539.1 | DUF3310 domain-containing protein | - |
| NDL74_RS02525 (NDL74_02525) | - | 473600..473749 (+) | 150 | WP_047920329.1 | phage associated protein | - |
| NDL74_RS02530 (NDL74_02530) | - | 473778..474059 (+) | 282 | WP_003689109.1 | hypothetical protein | - |
| NDL74_RS02535 (NDL74_02535) | - | 474050..474487 (+) | 438 | WP_229433529.1 | RusA family crossover junction endodeoxyribonuclease | - |
| NDL74_RS02540 (NDL74_02540) | - | 474480..474785 (+) | 306 | WP_025456182.1 | DUF1364 domain-containing protein | - |
| NDL74_RS02545 (NDL74_02545) | - | 474782..475165 (+) | 384 | WP_003699764.1 | recombination protein NinB | - |
| NDL74_RS02550 (NDL74_02550) | - | 475156..475674 (+) | 519 | WP_003693459.1 | HNH endonuclease | - |
| NDL74_RS02555 (NDL74_02555) | - | 475739..476161 (+) | 423 | WP_003690919.1 | hypothetical protein | - |
| NDL74_RS02560 (NDL74_02560) | - | 476161..476700 (+) | 540 | WP_003693457.1 | hypothetical protein | - |
| NDL74_RS02565 (NDL74_02565) | - | 476681..477955 (+) | 1275 | WP_003698265.1 | PBSX family phage terminase large subunit | - |
| NDL74_RS02570 (NDL74_02570) | - | 477940..480207 (+) | 2268 | WP_229433533.1 | hypothetical protein | - |
| NDL74_RS02575 (NDL74_02575) | - | 480445..481641 (+) | 1197 | WP_003693452.1 | hypothetical protein | - |
| NDL74_RS02580 (NDL74_02580) | - | 481638..488945 (+) | 7308 | WP_229931657.1 | PLxRFG domain-containing protein | - |
| NDL74_RS02585 (NDL74_02585) | - | 489571..490866 (+) | 1296 | WP_003693441.1 | DUF4043 family protein | - |
| NDL74_RS02590 (NDL74_02590) | - | 490924..491397 (+) | 474 | WP_003693439.1 | hypothetical protein | - |
| NDL74_RS02595 (NDL74_02595) | - | 491403..491888 (+) | 486 | WP_003693438.1 | hypothetical protein | - |
| NDL74_RS02600 (NDL74_02600) | - | 491885..492559 (+) | 675 | WP_003693436.1 | hypothetical protein | - |
| NDL74_RS02605 (NDL74_02605) | - | 492562..492711 (+) | 150 | WP_017146863.1 | hypothetical protein | - |
| NDL74_RS02610 (NDL74_02610) | - | 492748..493599 (-) | 852 | WP_003699775.1 | Bro-N domain-containing protein | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 35090.78 Da Isoelectric Point: 9.1777
>NTDB_id=736636 NDL74_RS02340 WP_229940798.1 452749..453708(+) (pilJ) [Neisseria gonorrhoeae strain 10272]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTGNDVVSNVAQKNALFYLKRNSTNSTNSTNSTNKLIPITESPNINYQKFFQVSSALIFQYGIDDVNASAATTV
VSSCAAISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGRIADEQGLFRFQLNEKGEWGNPQLLAKKIK
RMRVRYIYVSDCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGDAKIAASSDNIIYAYRINATIRGGNVCANRTL
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTGNDVVSNVAQKNALFYLKRNSTNSTNSTNSTNKLIPITESPNINYQKFFQVSSALIFQYGIDDVNASAATTV
VSSCAAISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGRIADEQGLFRFQLNEKGEWGNPQLLAKKIK
RMRVRYIYVSDCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGDAKIAASSDNIIYAYRINATIRGGNVCANRTL
Nucleotide
Download Length: 960 bp
>NTDB_id=736636 NDL74_RS02340 WP_229940798.1 452749..453708(+) (pilJ) [Neisseria gonorrhoeae strain 10272]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGGAAATGATGTTGTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTACTTAAAAAG
GAACAGTACAAACAGTACAAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATC
AGAAATTTTTCCAGGTTAGTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTC
GTCAGCAGCTGTGCCGCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGT
GAGTCAGGATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCG
ATGAGCAAGGTTTGTTCCGCTTCCAATTGAATGAAAAGGGTGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAA
CGTATGAGAGTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATAC
GGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTGGTGATGCCAAGATTGCCGCTT
CTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGGAAATGATGTTGTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTACTTAAAAAG
GAACAGTACAAACAGTACAAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATC
AGAAATTTTTCCAGGTTAGTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTC
GTCAGCAGCTGTGCCGCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGT
GAGTCAGGATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCG
ATGAGCAAGGTTTGTTCCGCTTCCAATTGAATGAAAAGGGTGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAA
CGTATGAGAGTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATAC
GGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTGGTGATGCCAAGATTGCCGCTT
CTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
92.163 |
100 |
0.922 |