Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   NDL74_RS02340 Genome accession   NZ_CP106921
Coordinates   452749..453708 (+) Length   319 a.a.
NCBI ID   WP_229940798.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10272     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 447749..458708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL74_RS02315 (NDL74_02315) - 448398..448907 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDL74_RS02320 (NDL74_02320) - 449139..449720 (-) 582 WP_003690895.1 superoxide dismutase -
  NDL74_RS02325 (NDL74_02325) dnaB 449884..451290 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDL74_RS02330 (NDL74_02330) pilH 451444..452109 (+) 666 WP_229940797.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDL74_RS02335 (NDL74_02335) pilV 452141..452752 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Machinery gene
  NDL74_RS02340 (NDL74_02340) pilJ 452749..453708 (+) 960 WP_229940798.1 PilW family protein Machinery gene
  NDL74_RS02345 (NDL74_02345) pilK 453687..454298 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDL74_RS02350 (NDL74_02350) pilL 454300..454773 (+) 474 WP_229940840.1 PilX family type IV pilin Machinery gene
  NDL74_RS02355 (NDL74_02355) - 454843..455151 (-) 309 WP_025456177.1 AzlD family protein -
  NDL74_RS02360 (NDL74_02360) - 455148..455858 (-) 711 Protein_464 AzlC family ABC transporter permease -
  NDL74_RS02365 (NDL74_02365) dut 456024..456476 (+) 453 WP_003699637.1 dUTP diphosphatase -
  NDL74_RS02370 (NDL74_02370) dapC 456552..457739 (+) 1188 WP_229931672.1 succinyldiaminopimelate transaminase -
  NDL74_RS02375 (NDL74_02375) yaaA 457895..458674 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 319 a.a.        Molecular weight: 35090.78 Da        Isoelectric Point: 9.1777

>NTDB_id=736636 NDL74_RS02340 WP_229940798.1 452749..453708(+) (pilJ) [Neisseria gonorrhoeae strain 10272]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTGNDVVSNVAQKNALFYLKRNSTNSTNSTNSTNKLIPITESPNINYQKFFQVSSALIFQYGIDDVNASAATTV
VSSCAAISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGRIADEQGLFRFQLNEKGEWGNPQLLAKKIK
RMRVRYIYVSDCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=736636 NDL74_RS02340 WP_229940798.1 452749..453708(+) (pilJ) [Neisseria gonorrhoeae strain 10272]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGGAAATGATGTTGTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTACTTAAAAAG
GAACAGTACAAACAGTACAAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATC
AGAAATTTTTCCAGGTTAGTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTC
GTCAGCAGCTGTGCCGCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGT
GAGTCAGGATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCG
ATGAGCAAGGTTTGTTCCGCTTCCAATTGAATGAAAAGGGTGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAA
CGTATGAGAGTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATAC
GGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTGGTGATGCCAAGATTGCCGCTT
CTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

92.163

100

0.922