Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   D1Y77_RS04035 Genome accession   NZ_CP121210
Coordinates   861062..862792 (-) Length   576 a.a.
NCBI ID   WP_284167599.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0421     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 856062..867792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1Y77_RS04015 (D1Y77_004015) dinB 856202..857284 (-) 1083 WP_161399234.1 DNA polymerase IV -
  D1Y77_RS04020 (D1Y77_004020) - 857370..858140 (-) 771 WP_004918231.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  D1Y77_RS04025 (D1Y77_004025) - 858164..860176 (-) 2013 WP_013446917.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  D1Y77_RS04030 (D1Y77_004030) - 860239..860901 (-) 663 WP_154469462.1 succinate dehydrogenase cytochrome b subunit -
  D1Y77_RS04035 (D1Y77_004035) comEC 861062..862792 (-) 1731 WP_284167599.1 ComEC/Rec2 family competence protein Machinery gene
  D1Y77_RS04040 (D1Y77_004040) - 862881..863318 (-) 438 WP_004918223.1 hypothetical protein -
  D1Y77_RS04045 (D1Y77_004045) - 863318..864946 (-) 1629 WP_154469461.1 carboxyl transferase domain-containing protein -
  D1Y77_RS04050 (D1Y77_004050) - 865051..866244 (-) 1194 WP_004918219.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 67321.75 Da        Isoelectric Point: 10.3097

>NTDB_id=736529 D1Y77_RS04035 WP_284167599.1 861062..862792(-) (comEC) [Riemerella anatipestifer strain RCAD0421]
MKKQILFSLFISFSLGVFLQDLNGFSWQNLNIIAILGVISLGLIWVKADWVVRIRIWLLNIFFLCFGVFTHYLNSEKSVL
PSVSKKEELVFKIEQKLNSTAKNKRYEITAFHQNQPFKAVLSVPKDLEELDYKHYYQSQLSLYPLESSKNNYQFDYAKFQ
ARKGVYYRAYARDLRKAPKSELTFSEKMKRWRLEFLSNIDKNEKLSQQTRAFLKGIVLADRTEVDAGTSSNFRRSGLAHI
LAISGTHIAIIFGVVYMLLRLVLPVRFRIGVILLSLSLIWAFAWFIGWGNSVVRSCIMLTVYFGFVLLQRKPQVLDSLAL
AGLGILIVDTQELFSVGFQLSFSAVLGIYWFNRPMIRLFPNPRNKIQKLLLYTFTMSTAAQLGTMPIVIYYFHQYSAWSI
LANLLVLPLMEIVIILSFLMTIVFGLGIYWNWLSFTYDWLIKALLRLIGFFGKIEIGSFQDIPLSIWEMGIWAVGLYFLR
EILIRFTWRGFMRLMFSVLLFFGIKMWLDIRAYHDKEAKWHYHYRTKVFSVLDKGKVCFWVADEDNLETLESNLIKPYVI
SKRAKSYKIKMMSRSK

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=736529 D1Y77_RS04035 WP_284167599.1 861062..862792(-) (comEC) [Riemerella anatipestifer strain RCAD0421]
GTGAAAAAGCAAATTCTTTTTAGTCTGTTTATAAGTTTTTCATTAGGTGTCTTTTTGCAAGACCTTAATGGGTTCTCGTG
GCAAAATCTCAATATTATAGCTATATTGGGGGTTATTAGTCTTGGGTTAATTTGGGTGAAAGCAGATTGGGTAGTTCGAA
TTAGAATTTGGTTACTCAATATCTTTTTTCTCTGTTTTGGAGTATTTACTCATTACCTTAATTCGGAAAAATCAGTTTTG
CCGAGTGTTTCTAAAAAGGAAGAGCTTGTTTTTAAAATTGAGCAAAAGCTGAATTCAACGGCTAAAAACAAACGCTATGA
AATAACAGCATTTCATCAAAATCAACCTTTTAAAGCAGTTTTATCTGTTCCAAAAGATTTGGAAGAATTGGATTATAAGC
ACTACTATCAGTCTCAACTAAGTCTATATCCGTTGGAGTCTTCCAAGAATAATTACCAGTTTGATTATGCCAAATTTCAA
GCAAGGAAAGGCGTATATTATAGAGCCTATGCCAGAGATTTACGCAAAGCTCCAAAATCAGAGCTTACTTTCTCCGAAAA
AATGAAACGATGGCGATTGGAATTCCTTAGTAATATAGATAAAAACGAAAAACTTTCACAGCAAACTAGAGCTTTCCTAA
AAGGAATTGTATTAGCCGATAGAACAGAGGTAGATGCAGGAACTAGTTCCAATTTTAGGCGAAGTGGCTTGGCACATATT
TTGGCTATTTCGGGGACGCACATAGCAATTATATTCGGAGTGGTCTATATGCTGTTGAGGTTAGTGTTACCTGTTAGATT
TCGGATTGGCGTAATATTACTTAGTTTGTCGTTAATTTGGGCTTTTGCTTGGTTTATTGGTTGGGGAAATTCTGTTGTTA
GGTCTTGTATCATGCTCACCGTTTATTTTGGTTTTGTCCTTCTGCAAAGGAAACCGCAAGTTTTGGATTCTTTAGCCTTG
GCAGGATTAGGGATTTTGATAGTGGATACACAAGAGTTGTTTTCGGTGGGATTTCAATTGAGTTTTTCGGCAGTATTGGG
AATTTATTGGTTTAATAGACCTATGATTCGTCTTTTTCCAAATCCTAGAAACAAAATTCAAAAACTATTGCTTTATACTT
TCACGATGTCCACGGCGGCACAGCTTGGGACTATGCCTATTGTGATTTATTATTTCCACCAGTATTCAGCGTGGTCTATT
TTGGCTAATCTTTTAGTCCTTCCTTTAATGGAAATTGTGATTATACTATCGTTTTTAATGACGATTGTTTTTGGTTTAGG
GATTTATTGGAATTGGCTATCTTTTACTTATGATTGGCTAATTAAAGCGTTGCTACGGCTGATAGGTTTCTTTGGTAAAA
TAGAGATAGGGTCTTTTCAAGACATACCGTTGAGTATTTGGGAGATGGGTATTTGGGCGGTAGGGCTTTATTTTCTAAGA
GAAATATTGATTCGTTTTACATGGAGAGGTTTTATGAGGTTGATGTTTTCTGTGCTTTTATTTTTCGGGATTAAAATGTG
GCTAGATATCAGAGCTTATCACGATAAAGAAGCAAAGTGGCATTACCATTATCGTACTAAAGTGTTCTCTGTTTTGGATA
AAGGTAAGGTGTGCTTTTGGGTGGCGGATGAAGATAATTTAGAAACGTTAGAAAGTAATCTCATAAAGCCTTATGTGATT
TCTAAAAGAGCTAAAAGTTATAAAATAAAAATGATGTCTAGAAGTAAATGA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(216-479)

Domain of unknown function (DUF4131) (DUF4131)

(29-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Riemerella anatipestifer ATCC 11845 = DSM 15868

97.739

99.826

0.976