Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   NX824_RS03885 Genome accession   NZ_CP106884
Coordinates   792555..793385 (-) Length   276 a.a.
NCBI ID   WP_263316856.1    Uniprot ID   -
Organism   Limosilactobacillus vaginalis strain GSH01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 787555..798385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX824_RS03875 (NX824_03875) - 789311..790825 (+) 1515 WP_124031334.1 hypothetical protein -
  NX824_RS03880 (NX824_03880) - 791116..792495 (+) 1380 WP_040531214.1 amino acid permease -
  NX824_RS03885 (NX824_03885) endA 792555..793385 (-) 831 WP_263316856.1 DNA/RNA non-specific endonuclease Machinery gene
  NX824_RS03890 (NX824_03890) - 793567..795342 (+) 1776 WP_124031333.1 oleate hydratase -
  NX824_RS03895 (NX824_03895) - 795462..797777 (+) 2316 WP_390893924.1 ATP-binding protein -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30608.35 Da        Isoelectric Point: 10.5992

>NTDB_id=736423 NX824_RS03885 WP_263316856.1 792555..793385(-) (endA) [Limosilactobacillus vaginalis strain GSH01]
MKFRKRLYHLLFALVGLLIVTGVIQQPKLTSASLNHISKIAYWKKTSHSYQKTLPPTQEQASSVLTPAVRQQLGTAITWN
KAGAFIINNNQTNLNAKIASAPYAVNHIDRQGRAWQGDAWLNRTTRQYKNRTATGNGATNWRPAGFLQAHNLKGGYNHAY
DRGHLLGYALVGGIHGFDASESNPSNIATQTAWANEARNKNSTGQNYYEGLVRKALDQNKQVRYRVTNIYDGNNIVPAGA
HIEAKSSDGSLEYNVFVPNVQRNITINYSTGAVKQN

Nucleotide


Download         Length: 831 bp        

>NTDB_id=736423 NX824_RS03885 WP_263316856.1 792555..793385(-) (endA) [Limosilactobacillus vaginalis strain GSH01]
ATGAAATTTAGAAAACGACTCTATCACCTTTTATTTGCTCTTGTTGGTTTATTAATAGTTACTGGAGTTATCCAGCAGCC
TAAGCTAACGAGTGCTTCATTAAACCATATTAGTAAAATTGCATACTGGAAGAAAACTAGTCACAGCTATCAAAAAACAT
TGCCACCAACTCAGGAACAGGCTAGTTCAGTTTTGACTCCGGCTGTTCGCCAACAACTTGGTACTGCAATTACTTGGAAT
AAAGCTGGTGCATTTATTATTAATAATAACCAAACTAATCTTAACGCTAAGATTGCAAGTGCTCCCTATGCTGTAAATCA
TATTGACCGCCAAGGAAGAGCCTGGCAAGGTGATGCCTGGTTAAACAGAACAACTCGTCAATATAAAAATCGAACTGCTA
CTGGGAATGGTGCTACGAATTGGCGACCAGCTGGTTTTCTTCAGGCTCATAATCTTAAGGGTGGGTACAATCACGCATAC
GATCGGGGACACCTTCTTGGTTATGCGCTAGTTGGCGGTATTCATGGATTTGATGCATCCGAATCAAATCCATCTAATAT
TGCCACGCAAACTGCCTGGGCAAATGAAGCACGAAATAAAAATTCAACAGGACAAAACTACTATGAAGGTCTGGTCCGAA
AAGCACTAGATCAAAATAAACAAGTTCGCTACCGGGTCACAAATATTTATGACGGTAATAATATTGTTCCGGCTGGTGCT
CACATCGAAGCTAAATCTAGCGATGGCTCTTTAGAATATAATGTTTTTGTGCCAAATGTCCAAAGAAATATTACGATTAA
CTATTCAACTGGCGCAGTAAAGCAAAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(84-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

58.009

83.696

0.486
  endA Streptococcus pneumoniae D39

58.009

83.696

0.486
  endA Streptococcus pneumoniae R6

58.009

83.696

0.486
  endA Streptococcus pneumoniae TIGR4

58.009

83.696

0.486