Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   OE104_RS02720 Genome accession   NZ_CP106878
Coordinates   570864..573221 (+) Length   785 a.a.
NCBI ID   WP_275418055.1    Uniprot ID   A0A9E8LV51
Organism   Fervidibacillus albus strain MEBiC13591     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 565864..578221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE104_RS02710 (OE104_02710) - 567482..567787 (+) 306 WP_275418053.1 post-transcriptional regulator -
  OE104_RS02715 (OE104_02715) secDF 567952..570213 (+) 2262 WP_275418054.1 protein translocase subunit SecDF -
  OE104_RS02720 (OE104_02720) recJ 570864..573221 (+) 2358 WP_275418055.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  OE104_RS02725 (OE104_02725) - 573212..573724 (+) 513 WP_275418056.1 adenine phosphoribosyltransferase -
  OE104_RS02730 (OE104_02730) - 574022..576214 (+) 2193 WP_275418057.1 RelA/SpoT family protein -
  OE104_RS02735 (OE104_02735) dtd 576226..576672 (+) 447 WP_275418058.1 D-aminoacyl-tRNA deacylase -
  OE104_RS02740 (OE104_02740) - 576788..576961 (+) 174 WP_275418059.1 hypothetical protein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 89395.08 Da        Isoelectric Point: 5.2729

>NTDB_id=736356 OE104_RS02720 WP_275418055.1 570864..573221(+) (recJ) [Fervidibacillus albus strain MEBiC13591]
MLQPKTRWIVRKGNRENVKQLIEQLQFTPLVATLLVNRGIDTVEKAAHFLQDGTLFDPFLLNDMDVCVERIKAGIEKGEK
MVVYGDYDADGVTSTTVLLTALKQLGANVDYYIPNRFSEGYGPNEAAFRYLKDAGVDLIITVDNGIAAIREAKIAKDLGM
DVIITDHHEPGPELPEAVAIIHPKRPDSTYPFSDLAGVGVAYKVASALLPTPPEHLLPLVAIGTVADLVSLTSENRQMVK
NGLERLKGTNHIGLSALMKASGINQHDIDEETIGYILAPRMNAPGRLDDASLAVELLLANNREEAEHLAQEMNEMNRRRQ
EIVNEMEREAIEEIERRGFENDSVFVIGKQDWHPGVIGIVASRLVEKYYRPTIIFSYDSEGNLAKGSARSIPNFHLYNNL
TQCRDLLLQFGGHPMAAGMTAEVDKVDDLRDRLNGLAFEQLTEEDLIPVTELDGVVSLENIDLYGLEQLQKLAPFGTDHP
KPNFLIKDIRLSNIKKVGSDLNHLKFSLTDGEHSLDGIGFQMGEVADHLSPLSNVSVIGELGINEWNQIRKPQIYLKDIA
VNEWQLFDYRGQHPLKRWIDKIPETNRRFIVFDEKNINTLQLAEYSEDVTIIRTIDEAKNCPLDEKNVVLIDMPESENLM
TSLIEGKRVHRIYAYFYQERTNYFRTLPTREHFKWFYLFLVKKGVFDLHRYGRELAKHRGWTTNTVHFMTKVFSELEFVT
INNGIVTVCDIPKKRDLSESPTFQKIQEAARLEKLLLYSPYRNLKYWFDQYVSTETIKEEKIVWI

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=736356 OE104_RS02720 WP_275418055.1 570864..573221(+) (recJ) [Fervidibacillus albus strain MEBiC13591]
ATGCTACAGCCAAAGACACGATGGATCGTGCGAAAAGGAAATCGAGAAAACGTCAAACAACTGATCGAGCAATTACAGTT
CACACCTCTTGTCGCCACGTTACTCGTTAATCGAGGAATCGATACGGTTGAGAAGGCGGCACATTTTCTACAAGATGGTA
CACTTTTCGACCCGTTTTTGTTGAATGATATGGATGTTTGTGTGGAGCGGATTAAAGCGGGGATTGAAAAAGGGGAAAAA
ATGGTCGTCTATGGCGATTATGATGCCGATGGGGTGACGAGTACGACCGTATTGTTAACCGCATTGAAACAATTAGGTGC
GAATGTTGATTACTATATTCCGAACCGGTTTTCGGAAGGGTACGGCCCGAATGAAGCTGCCTTTCGATATTTAAAGGATG
CCGGTGTCGACTTGATCATTACGGTCGATAACGGAATCGCCGCCATACGAGAAGCGAAGATTGCCAAAGATCTCGGCATG
GATGTCATTATTACGGATCACCATGAACCGGGTCCTGAACTTCCTGAAGCTGTAGCCATCATTCATCCGAAACGTCCCGA
TTCCACCTATCCATTTTCAGACTTAGCTGGTGTCGGAGTTGCATATAAAGTGGCGAGCGCCCTGTTACCAACGCCACCCG
AACATTTATTACCCCTCGTCGCCATCGGAACGGTGGCCGATCTCGTCTCCCTGACAAGTGAAAATCGCCAAATGGTGAAA
AACGGTTTGGAACGATTAAAGGGAACGAATCATATCGGACTGTCCGCTTTAATGAAAGCATCGGGAATTAACCAACACGA
TATCGATGAAGAAACGATTGGTTACATTTTAGCCCCGAGAATGAATGCACCGGGGAGATTAGATGACGCAAGTTTAGCCG
TCGAATTGCTTTTGGCGAATAATCGTGAAGAGGCCGAACATTTGGCCCAAGAGATGAATGAAATGAATCGACGTAGACAA
GAAATCGTCAATGAAATGGAACGGGAAGCGATCGAAGAAATCGAAAGAAGGGGATTTGAGAATGATTCTGTTTTTGTAAT
CGGTAAGCAGGATTGGCACCCCGGCGTAATCGGCATTGTCGCCTCTCGACTCGTAGAAAAGTATTATCGCCCGACGATTA
TTTTTAGTTACGATTCCGAGGGGAACTTGGCAAAGGGATCGGCAAGGAGTATTCCGAATTTTCATTTGTACAACAATCTC
ACCCAATGTCGGGATTTATTGCTTCAATTCGGAGGTCACCCGATGGCTGCCGGAATGACGGCAGAGGTTGACAAGGTAGA
CGATTTACGCGATCGACTCAATGGATTAGCGTTCGAACAATTAACGGAAGAAGACTTGATTCCTGTAACGGAACTCGATG
GGGTTGTTTCGTTGGAAAATATTGATCTTTATGGACTGGAACAATTGCAAAAACTGGCTCCCTTTGGAACGGATCATCCA
AAGCCGAATTTTTTAATTAAAGATATTCGTTTATCGAACATAAAAAAAGTCGGTAGCGATCTTAACCATTTGAAATTCAG
TTTAACGGATGGAGAACATTCCCTCGATGGCATTGGTTTTCAGATGGGAGAAGTTGCCGATCATTTATCCCCATTATCCA
ACGTTTCCGTCATCGGGGAATTAGGCATTAACGAATGGAATCAAATTCGGAAGCCGCAAATTTATTTAAAGGATATTGCC
GTTAATGAATGGCAACTTTTTGATTACCGGGGCCAACATCCGTTGAAACGGTGGATCGATAAAATACCTGAAACAAATCG
ACGCTTCATCGTTTTTGATGAAAAAAATATAAATACATTGCAACTGGCCGAATATAGCGAGGATGTAACGATTATCCGTA
CGATCGACGAAGCGAAAAATTGTCCATTAGACGAGAAAAATGTCGTTTTGATCGATATGCCCGAATCGGAGAACTTGATG
ACATCATTGATTGAAGGAAAACGTGTCCACCGGATTTATGCTTATTTTTATCAAGAACGAACGAATTATTTTCGTACATT
ACCGACGCGGGAGCATTTCAAATGGTTTTATTTGTTTCTTGTAAAAAAAGGGGTATTCGATTTGCATCGGTATGGTCGCG
AATTGGCAAAACATCGAGGATGGACGACAAATACTGTCCATTTTATGACAAAGGTGTTTTCTGAATTGGAATTTGTTACA
ATAAATAATGGGATTGTAACCGTATGCGATATACCGAAAAAAAGAGATTTATCGGAATCACCGACTTTTCAAAAAATACA
AGAGGCAGCAAGGTTAGAAAAACTATTGTTATACTCCCCATATCGAAACTTAAAATATTGGTTTGATCAATATGTATCCA
CTGAAACTATTAAGGAGGAAAAAATCGTATGGATTTGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(565-768)

DHHA1 domain (DHHA1)

(313-435)

RecJ OB domain (RecJ_OB)

(453-558)

DHH family (DHH)

(80-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

48.715

99.108

0.483